8d6f251e885f2a8a3c6f32b4a3c0a47c11b00206
braney
  Sat Aug 20 15:23:42 2022 -0700
add prototype HGNC track to hg38

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 2e8845c..d16b396 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -5602,15 +5602,31 @@
 longLabel Orphadata: Aggregated Data From Orphanet
 group phenDis
 type bigBed 9 +
 bedNameLabel OrphaCode
 url http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$
 urlLabel OrphaNet Phenotype Link:
 urls ensemblID="https://grch37.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" pmid="https://pubmed.ncbi.nlm.nih.gov/$$" orphaCode="http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$" omim="https://www.omim.org/entry/$$?search=$$&highlight=$$" hgnc="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$"
 skipEmptyFields on
 skipFields name,score,itemRgb
 mouseOver Gene: $geneSymbol, Disorder: $disorder, Inheritance(s): $inheritance, Onset: $onsetList
 filterValues.assnType Biomarker tested in,Candidate gene tested in,Disease-causing germline mutation(s) (gain of function) in,Disease-causing germline mutation(s) (loss of function) in,Disease-causing germline mutation(s) in,Disease-causing somatic mutation(s) in,Major susceptibility factor in,Modifying germline mutation in,Part of a fusion gene in,Role in the phenotype of
 filterValues.inheritance Autosomal dominant,Autosomal recessive,Mitochondrial inheritance,Multigenic/multifactorial,No data available,Not applicable,Oligogenic,Semi-dominant,Unknown,X-linked dominant,X-linked recessive,Y-linked
 filterValues.onsetList Adolescent,Adult,All ages,Antenatal,Childhood,Elderly,Infancy,Neonatal,No data available
 itemRgb on
 
+track hgnc
+shortLabel HGNC
+longLabel HGNC
+bigDataUrl /gbdb/$D/hgnc/hgnc.bb
+type bigBed 9 +
+labelFields symbol, geneName, name, uniprot_ids, ensembl_gene_id, ucsc_id, refseq_accession, alias_symbol, prev_symbol
+defaultLabelFields symbol
+filterValues.locus_type RNA Y,RNA cluster,RNA long non-coding,RNA micro,RNA misc,RNA ribosomal,RNA small nuclear,RNA small nucleolar,RNA transfer,RNA vault,T cell receptor gene,T cell receptor pseudogene,complex locus constituent,endogenous retrovirus,fragile site,gene with protein product,immunoglobulin gene,immunoglobulin pseudogene,locus_type,protocadherin,pseudogene,readthrough,region,unknown,virus integration site,
+group genes
+searchIndex name
+searchTrix /gbdb/$D/hgnc/search.ix
+
+searchTable hgnc
+searchMethod exact
+searchType bigBed
+