8d6f251e885f2a8a3c6f32b4a3c0a47c11b00206 braney Sat Aug 20 15:23:42 2022 -0700 add prototype HGNC track to hg38 diff --git src/hg/lib/hgncBig62.as src/hg/lib/hgncBig62.as new file mode 100644 index 0000000..7923b6a --- /dev/null +++ src/hg/lib/hgncBig62.as @@ -0,0 +1,67 @@ +table hgnc +"A cross-reference table between HUGO Gene Nomenclature Committee (HGNC) IDs and other database IDs." + ( + string chrom; "Chromosome (or contig, scaffold, etc.)" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Name of item" + uint score; "Score from 0-1000" + char[1] strand; "+ or -" + uint thickStart; "Start of where display should be thick (start codon)" + uint thickEnd; "End of where display should be thick (stop codon)" + uint reserved; "Used as itemRgb as of 2004-11-22" + + string symbol; "symbol" + string geneName; "geneName" + string locus_group; "locus_group" + string locus_type; "locus_type" + string status; "status" + string location; "location" + string location_sortable; "location_sortable" + string alias_symbol; "alias_symbol" + lstring alias_name; "alias_name" + string prev_symbol; "prev_symbol" + lstring prev_name; "prev_name" + string gene_group; "gene_group" + string gene_group_id; "gene_group_id" + string date_approved_reserved; "date_approved_reserved" + string date_symbol_changed; "date_symbol_changed" + string date_name_changed; "date_name_changed" + string date_modified; "date_modified" + string entrez_id; "entrez_id" + string ensembl_gene_id; "ensembl_gene_id" + string vega_id; "vega_id" + string ucsc_id; "ucsc_id" + string ena; "ena" + string refseq_accession; "refseq_accession" + string ccds_id; "ccds_id" + string uniprot_ids; "uniprot_ids" + string pubmed_id; "pubmed_id" + string mgd_id; "mgd_id" + string rgd_id; "rgd_id" + lstring lsdb; "lsdb" + string cosmic; "cosmic" + string omim_id; "omim_id" + string mirbase; "mirbase" + string homeodb; "homeodb" + string snornabase; "snornabase" + string bioparadigms_slc; "bioparadigms_slc" + string orphanet; "orphanet" + string pseudogeneOrg; "pseudogeneOrg" + string horde_id; "horde_id" + string merops; "merops" + string imgt; "imgt" + string iuphar; "iuphar" + string kznf_gene_catalog; "kznf_gene_catalog" + string mamitTrnadb; "mamitTrnadb" + string cd; "cd" + string lncrnadb; "lncrnadb" + string enzyme_id; "enzyme_id" + string intermediate_filament_db; "intermediate_filament_db" + string rna_central_ids; "rna_central_ids" + string lncipedia; "lncipedia" + string gtrnadb; "gtrnadb" + string agr; "agr" + string mane_select; "mane_select" + string gencc; "gencc" + )