1ed40bfa70579f764d1110fa4aa5467e6e5b78d9 hiram Fri Aug 19 11:09:34 2022 -0700 update the file to watch for the next versions of this track refs #29891 diff --git src/hg/utils/otto/ncbiRefSeq/runHg38.sh src/hg/utils/otto/ncbiRefSeq/runHg38.sh index 2eaac42..2221f96 100755 --- src/hg/utils/otto/ncbiRefSeq/runHg38.sh +++ src/hg/utils/otto/ncbiRefSeq/runHg38.sh @@ -1,17 +1,17 @@ #!/bin/bash set -beEu -o pipefail export TOP="/hive/data/outside/otto/ncbiRefSeq" cd "${TOP}" export db="hg38" export Db="Hg38" export sumFile="prev${Db}.sum" -export asmId="GCF_000001405.39_GRCh38.p13" +export asmId="GCF_000001405.40_GRCh38.p14" export dateStamp=`date "+%F"` -export wrkDir="/hive/data/genomes/${db}/bed/ncbiRefSeq.p13.${dateStamp}" +export wrkDir="/hive/data/genomes/${db}/bed/ncbiRefSeq.p14.${dateStamp}" export sumFile="${TOP}/prev${Db}.sum" -export gffFile="/hive/data/outside/ncbi/genomes/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GCF_000001405.39_GRCh38.p13_genomic.gff.gz" +export gffFile="/hive/data/outside/ncbi/genomes/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF_000001405.40_GRCh38.p14_genomic.gff.gz" ${TOP}/runUcscDb.sh "${db}" "${Db}" "${sumFile}" "${asmId}" "${wrkDir}" "${gffFile}"