a93daa92b77f5717f8ff247cb049a46cd0f66409
markd
  Sun Aug 21 17:37:28 2022 -0700
add transcriptRank column to wgEncodeGencodeAttrs in preperation for getting transcript ranks in upcomming gencode distribution.  Import GENCODE V42 prerelease to test out creating column

diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk
index 1fc0737..0b44272 100644
--- src/hg/makeDb/outside/gencode/gencodeLoad.mk
+++ src/hg/makeDb/outside/gencode/gencodeLoad.mk
@@ -20,57 +20,57 @@
 host=$(shell hostname)
 ppid=$(shell echo $$PPID)
 tmpExt = ${host}.${ppid}.tmp
 SHELL = bash -e
 export SHELLOPTS=pipefail
 
 ##
 # programs, etc
 ##
 mach = $(shell uname -m)
 
 ##
 # Release info and files from Sanger.
 # BEGIN EDIT THESE EACH RELEASE
 ##
-preRelease = no
-#preRelease = yes
-#db = hg38
-db = hg19
+#preRelease = no
+preRelease = yes
+db = hg38
+#db = hg19
 #db = mm39
 #db = mm10
 ifeq (${db},mm10)
     grcRefAssembly = GRCm38
     verBase = M25
     prevVer = M24
     backmapTargetVer = M25
     ver = ${verBase}lift37
     gencodeOrg = Gencode_mouse
     ftpReleaseSubdir = release_${verBase}/GRCm38_mapping
     annGffTypeName = chr_patch_hapl_scaff.annotation
     isBackmap = yes
 else ifeq (${db},mm39)
     grcRefAssembly = GRCm39
     ver = M30
     prevVer = M29
     gencodeOrg = Gencode_mouse
     ftpReleaseSubdir = release_${ver}
     annGffTypeName = chr_patch_hapl_scaff.annotation
 else ifeq (${db},hg38)
     grcRefAssembly = GRCh38
-    ver = 41
-    prevVer = 40
+    ver = 42
+    prevVer = 41
     gencodeOrg = Gencode_human
     ftpReleaseSubdir = release_${ver}
     annGffTypeName = chr_patch_hapl_scaff.annotation
 else ifeq (${db},hg19)
     grcRefAssembly = GRCh37
     verBase = 41
     ver = ${verBase}lift37
     prevVer = 38lift37
     backmapTargetVer = 19
     ftpReleaseSubdir = release_${verBase}/GRCh37_mapping
     gencodeOrg = Gencode_human
     annGffTypeName = annotation
     isBackmap = yes
 else
     $(error unimplement genome database: ${db})