bb81d6d10b9c22486ee6745375383d9a8d136230
max
  Fri Aug 19 03:10:28 2022 -0700
documenting refseqgene alias for lrg, very confusing, refs #29891

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 0581b0a..2e8845c 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -90,31 +90,31 @@
 
     track hiSeqDepthTop5Pct
     parent hiSeqDepth
     shortLabel Top 0.05 Depth
     longLabel Top 0.05 of Read Depth Distribution
     priority 4
 
     track hiSeqDepthTop10Pct
     parent hiSeqDepth
     shortLabel Top 0.10 Depth
     longLabel Top 0.10 of Read Depth Distribution
     priority 5
 
 track lrg
 shortLabel LRG Regions
-longLabel Locus Reference Genomic (LRG) Sequences Mapped to $date Assembly
+longLabel Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to $date Assembly
 group map
 visibility hide
 type bigBed 12 +
 noScoreFilter .
 urlLabel Link to LRG report: 
 url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml
 urls hgncId="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" ncbiAcc="https://www.ncbi.nlm.nih.gov/nuccore/$$"
 baseColorDefault diffBases
 baseColorUseSequence lrg
 indelDoubleInsert on
 indelQueryInsert on
 showDiffBasesAllScales .
 color 72,167,38
 searchIndex name,ncbiAcc
 
@@ -3250,31 +3250,31 @@
 longLabel C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase
 group genes
 visibility hide
 color 200,80,0
 type bed 8 +
 noScoreFilter .
 urlLabel Laboratoire de Biologie Moleculaire Eucaryote:
 url http://www-snorna.biotoul.fr/plus.php?id=$$
 url2Label miRBase:
 #url2 http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?id=$$
 url2 http://www.mirbase.org/cgi-bin/query.pl?terms=$$
 dataVersion miRBase Release 13.0 (March 2009) and snoRNABase Version 3
 
 track lrgTranscriptAli
 shortLabel LRG Transcripts
-longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations
+longLabel Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations
 group genes
 visibility hide
 type bigPsl
 html lrgTranscriptAli
 mouseOver ${name}: ${ncbiTranscript} ${ensemblTranscript} ${ncbiProtein} ${ensemblProtein} ${geneName}
 skipFields mouseOver
 skipEmptyFields on
 urls ncbiTranscript=https://www.ncbi.nlm.nih.gov/nuccore/$$ ensemblTranscript=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$ ncbiProtein=https://www.ncbi.nlm.nih.gov/protein/$$ ensemblProtein=http://www.ensembl.org/Multi/Search/Results?site=ensembl_all;q=$$
 altColor 127,127,127
 baseColorDefault genomicCodons
 baseColorUseSequence lfExtra
 indelDoubleInsert on
 indelPolyA on
 indelQueryInsert on
 showDiffBasesAllScales .