48323273924a067a8a30a31fecf2265ccfa59905
max
  Fri Aug 19 08:28:07 2022 -0700
tiny change to uniprot docs page, #28560

diff --git src/hg/makeDb/trackDb/uniprotAlpha.html src/hg/makeDb/trackDb/uniprotAlpha.html
index f876de0..7ca655c 100644
--- src/hg/makeDb/trackDb/uniprotAlpha.html
+++ src/hg/makeDb/trackDb/uniprotAlpha.html
@@ -229,32 +229,31 @@
 that was used for the alignment is shown when clicking a protein alignment
 in one of the two alignment tracks.
 </p>
 
 <p>
 For reproducibility of older analysis results, previous versions of this track
 are available for browsing in the form of the <a
     href="hgTracks?db=$db&hubUrl=https://hgdownload.soe.ucsc.edu/goldenPath/archive/$db/uniprot/hub.txt"
     target=_blank> UCSC UniProt Archive Track Hub</a>. The underlying data of
     all releases of this track (past and current) can be obtained from our <a
     href="https://hgdownload.soe.ucsc.edu/goldenPath/archive/$db/uniprot"
 target=_blank>downloads server</a>, including the UniProt
 protein-to-genome alignment. The file formats available are in the
 command line programs liftOver or pslMap, which can be used to map
 coordinates on protein sequences to genome coordinates. The filenames are
-unipToGenome.over.chain.gz and unipToGenomeLift.psl.gz.  </p>
-<!-- should I add pslMap/liftOver examples here? -->
+unipToGenome.over.chain.gz (liftOver) and unipToGenomeLift.psl.gz (pslMap).  </p>
 
 <h2>Data Access</h2>
 
 <p>
 The raw data of the current track can be explored interactively with the
 <a href="../cgi-bin/hgTables">Table Browser</a>, or the
 <a href="../cgi-bin/hgIntegrator">Data Integrator</a>.
 For automated analysis, the genome annotation is stored in a bigBed file that 
 can be downloaded from the
 <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/uniprot/" target="_blank">download server</a>.
 The exact filenames can be found in the 
 <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/trackDb/uniprot.ra">track configuration file</a>. 
 Annotations can be converted to ASCII text by our tool <tt>bigBedToBed</tt>
 which can be compiled from the source code or downloaded as a precompiled
 binary for your system. Instructions for downloading source code and binaries can be found