2248d4012416d220927d54ea0c47295560792625
hiram
  Mon Sep 12 22:06:58 2022 -0700
now working through gatewayPage although it needs to have URLs for downloads adjusted refs #29811

diff --git src/hg/utils/automation/doAssemblyHub.pl src/hg/utils/automation/doAssemblyHub.pl
index 650231e..c663322 100755
--- src/hg/utils/automation/doAssemblyHub.pl
+++ src/hg/utils/automation/doAssemblyHub.pl
@@ -1055,49 +1055,56 @@
 fi
 
 exit 0
 
 _EOF_
   );
   $bossScript->execute();
 } # chromAlias
 
 #########################################################################
 # * step: gatewayPage [workhorse]
 sub doGatewayPage {
   my $runDir = "$buildDir/html";
   &HgAutomate::mustMkdir($runDir);
 
-  my $whatItDoes = "construct html/$asmId.description.html";
+  my $whatItDoes = "construct html/$defaultName.description.html";
   my $bossScript = newBash HgRemoteScript("$runDir/doGatewayPage.bash",
                     $workhorse, $runDir, $whatItDoes);
 
   my $photoJpg = "noPhoto";
   my $photoCredit = "noPhoto";
   my $photoLink = "";
   my $speciesNoBlank = $species;
   $speciesNoBlank =~ s/ /_/g;
+printf STDERR "# looking for photo species: %s\n", ${speciesNoBlank};
   if ( -s "$runDir/../photo/$speciesNoBlank.jpg" ) {
      $photoJpg = "../photo/${speciesNoBlank}.jpg";
      $photoCredit = "../photo/photoCredits.txt";
      $photoLink = "rm -f ${speciesNoBlank}.jpg; ln -s ../photo/${speciesNoBlank}.jpg ."
   } else {
      printf STDERR "# gatewayPage: warning: no photograph available\n";
   }
 
+printf STDERR "# asmId: %s\n", $defaultName;
+printf STDERR "# asmReport %s\n", $asmReport;
+printf STDERR "# chrom.sizes: ../%s.chrom.sizes\n", $defaultName;
+printf STDERR "# photoJpg %s\n", $photoJpg;
+printf STDERR "# photoCredit %s\n", $photoCredit;
+
   $bossScript->add(<<_EOF_
-export asmId=$asmId
+export asmId="$defaultName"
 export asmReport="$asmReport"
 
 \$HOME/kent/src/hg/utils/automation/asmHubGatewayPage.pl \\
      \${asmReport} ../\${asmId}.chrom.sizes \\
          $photoJpg $photoCredit \\
            > \$asmId.description.html 2> \$asmId.names.tab
 \$HOME/kent/src/hg/utils/automation/genbank/buildStats.pl \\
        ../\$asmId.chrom.sizes 2> \$asmId.build.stats.txt
 $photoLink
 _EOF_
   );
   $bossScript->execute();
 } # gatewayPage
 
 #########################################################################