9595301c34b8e4818baa37a72eff7e5cbfcfcb4e
hiram
  Tue Sep 13 13:20:15 2022 -0700
now working thru trackDb although the generated html needs to be fixed up refs #29811

diff --git src/hg/utils/automation/doAssemblyHub.pl src/hg/utils/automation/doAssemblyHub.pl
index 8c3deb2..4f8120d 100755
--- src/hg/utils/automation/doAssemblyHub.pl
+++ src/hg/utils/automation/doAssemblyHub.pl
@@ -1949,36 +1949,36 @@
 _EOF_
   );
   $bossScript->execute();
 } # doXenoRefGene
 
 #########################################################################
 # * step: trackDb [workhorse]
 sub doTrackDb {
   my $runDir = "$buildDir";
   &HgAutomate::mustMkdir($runDir);
 
   my $whatItDoes = "construct asmId.trackDb.txt file";
   my $bossScript = newBash HgRemoteScript("$runDir/doTrackDb.bash",
                     $workhorse, $runDir, $whatItDoes);
 
-  if (! -s "${buildDir}/trackData/chromAlias/${asmId}.chromAlias.txt" ) {
-    die "ERROR: can not find ${asmId}.chromAlias.txt in\n# ${buildDir}/trackData/chromAlias/\n";
+  if (! -s "${buildDir}/trackData/chromAlias/${defaultName}.chromAlias.txt" ) {
+    die "ERROR: can not find ${defaultName}.chromAlias.txt in\n# ${buildDir}/trackData/chromAlias/\n";
   }
 
   $bossScript->add(<<_EOF_
-export asmId=$asmId
+export asmId=$defaultName
 export buildDir=$buildDir
 
 rm -f \$asmId.chromAlias.txt
 ln -s trackData/chromAlias/\${asmId}.chromAlias.txt .
 if [ -s trackData/chromAlias/\${asmId}.chromAlias.bb ]; then
   rm -f \${asmId}.chromAlias.bb
   ln -s trackData/chromAlias/\${asmId}.chromAlias.bb .
 fi
 \$HOME/kent/src/hg/utils/automation/asmHubTrackDb.sh \$asmId \$buildDir \\
    > \$asmId.trackDb.txt
 
 _EOF_
   );
   $bossScript->execute();
 } # trackDb