48578d7724625cda2499bd11f8b6ce19463a1279
braney
  Fri Sep 2 15:24:25 2022 -0700
HGNC track is ready for QA.

diff --git src/hg/lib/hgncBig62.as src/hg/lib/hgncBig62.as
index 2e657a3..19a649e 100644
--- src/hg/lib/hgncBig62.as
+++ src/hg/lib/hgncBig62.as
@@ -1,67 +1,67 @@
 table hgncBig62
 "A cross-reference table between HUGO Gene Nomenclature Committee (HGNC) IDs and other database IDs."
     (
     string chrom;      "Chromosome (or contig, scaffold, etc.)"
     uint   chromStart; "Start position in chromosome"
     uint   chromEnd;   "End position in chromosome"
-    string name;       "Name of item"
+    string name;       "HGNC Identifier"
     uint   score;      "Score from 0-1000"
     char[1] strand;    "+ or -"
     uint thickStart;   "Start of where display should be thick (start codon)"
     uint thickEnd;     "End of where display should be thick (stop codon)"
     uint reserved;     "Used as itemRgb as of 2004-11-22"
 
-    string symbol; "symbol"
-    string geneName; "geneName"
-    string locus_group; "locus_group"
-    string locus_type; "locus_type"
-    string status; "status"
-    string location; "location"
-    string location_sortable; "location_sortable"
-    string alias_symbol; "alias_symbol"
-    lstring alias_name; "alias_name"
-    string prev_symbol; "prev_symbol"
-    lstring prev_name; "prev_name"
-    string gene_group; "gene_group"
-    string gene_group_id; "gene_group_id"
-    string date_approved_reserved; "date_approved_reserved"
-    string date_symbol_changed; "date_symbol_changed"
-    string date_name_changed; "date_name_changed"
-    string date_modified; "date_modified"
-    string entrez_id; "entrez_id"
-    string ensembl_gene_id; "ensembl_gene_id"
-    string vega_id; "vega_id"
-    string ucsc_id; "ucsc_id"
-    string ena; "ena"
-    string refseq_accession; "refseq_accession"
-    string ccds_id; "ccds_id"
-    string uniprot_ids; "uniprot_ids"
-    string pubmed_id; "pubmed_id"
-    string mgd_id; "mgd_id"
-    string rgd_id; "rgd_id"
-    lstring lsdb; "lsdb"
-    string cosmic; "cosmic"
-    string omim_id; "omim_id"
-    string mirbase; "mirbase"
-    string homeodb; "homeodb"
-    string snornabase; "snornabase"
-    string bioparadigms_slc; "bioparadigms_slc"
-    string orphanet; "orphanet"
-    string pseudogeneOrg; "pseudogeneOrg"
-    string horde_id; "horde_id"
-    string merops; "merops"
-    string imgt; "imgt"
-    string iuphar; "iuphar"
-    string kznf_gene_catalog; "kznf_gene_catalog"
-    string mamitTrnadb; "mamitTrnadb"
-    string cd; "cd"
-    string lncrnadb; "lncrnadb"
-    string enzyme_id; "enzyme_id"
-    string intermediate_filament_db; "intermediate_filament_db"
-    string rna_central_ids; "rna_central_ids"
-    string lncipedia; "lncipedia"
-    string gtrnadb; "gtrnadb"
-    string agr; "agr"
-    string mane_select; "mane_select"
-    string gencc; "gencc"
+    string symbol; "Gene Symbol"
+    string geneName; "Gene Name"
+    string locus_group; "Locus Group"
+    string locus_type; "Locus Type"
+    string status; "Status"
+    string location; "Cytogenetic Location"
+    string location_sortable; "Cytogenetic Location (sortable)"
+    string alias_symbol; "Other Symbols Used"
+    lstring alias_name; "Other Names Used"
+    string prev_symbol; "Previous Approved HGNC Symbols"
+    lstring prev_name; "Previous Approved HGNC Names"
+    string gene_group; "Gene Family"
+    string gene_group_id; "Gene Family ID"
+    string date_approved_reserved; "Date Symbol First Approved"
+    string date_symbol_changed; "Date Symbol Last Changed"
+    string date_name_changed; "Date Name Last Changed"
+    string date_modified; "Data Entry Last Changed"
+    string entrez_id; "Entrez gene ID"
+    string ensembl_gene_id; "Ensembl gene ID"
+    string vega_id; "Vega gene ID"
+    string ucsc_id; "UCSC gene ID"
+    string ena; "International Nucleotide Sequence Database Collaboration  accession"
+    string refseq_accession; "RefSeq nucleotide accesions(s)"
+    string ccds_id; "Consensus CDS ID"
+    string uniprot_ids; "UniProt protein accession."
+    string pubmed_id; "Pubmed PMID"
+    string mgd_id; "Mouse genome informatics ID"
+    string rgd_id; "Rat genome database ID"
+    lstring lsdb; "Locus Specific Mutations Database ID"
+    string cosmic; "Catalogue of somatic mutations ID"
+    string omim_id; "Online Mendelian Inheritance in Man ID"
+    string mirbase; "mirBase ID"
+    string homeodb; "Homeibox Database ID"
+    string snornabase; "snoRNABase ID"
+    string bioparadigms_slc; "Bioparadigms SLC ID"
+    string orphanet; "Orphanet ID"
+    string pseudogeneOrg; "PseudogeneOrg ID"
+    string horde_id; "HORDE ID"
+    string merops; "MEROPS peptide database"
+    string imgt; "ImMunoGeneTics ID"
+    string iuphar; "IUPHAR ID"
+    string kznf_gene_catalog; "KZNF Gene Catalog ID"
+    string mamitTrnadb; "Mamit-tRNA ID"
+    string cd; "Cell Differentiation Database ID"
+    string lncrnadb; "lncRNA Database ID"
+    string enzyme_id; "ENZYME EC accession"
+    string intermediate_filament_db; "Intermediate Filament Database"
+    string rna_central_ids; "RNAcentral ID"
+    string lncipedia; "LNCipedia ID"
+    string gtrnadb; "Genomic tRNA Database ID"
+    string agr; "Alliance of Genome Resources ID"
+    string mane_select; "MANE Select ID(s)"
+    string gencc; "GenCC ID"
     )