aaced70d252c2ef4bea708a182da0ecb3987a8c1
hiram
  Wed Sep 7 10:52:40 2022 -0700
adding TOGA vs. hg38 and vs. galGal6 tracks to database assemblies refs #29982

diff --git src/hg/makeDb/trackDb/trackDb.ra src/hg/makeDb/trackDb/trackDb.ra
index afb7b9b..2be2790 100644
--- src/hg/makeDb/trackDb/trackDb.ra
+++ src/hg/makeDb/trackDb/trackDb.ra
@@ -3052,15 +3052,43 @@
 filterValues.varClass deletion|Deletion,delins|Deletion-Insertion,insertion|Insertion,multipleNucleotideSubstitution|Multiple nucleotide substitution,substitution|Substitution,sequence alteration|Sequence alteration
 filterLabel.varClass Variant class from EVA SO term
 filterLabel.ucscClass Functional effect per UCSC Variant Annotation
 filterValues.ucscClass downstream_gene_variant|Downstream gene variant,upstream_gene_variant|Upstream gene variant,intron_variant|Intron variant,NMD_transcript_variant|Nonsense-mediated mRNA decay (NMD) variant,5_prime_UTR_variant|5 prime UTR variant,3_prime_UTR_variant|3 prime UTR variant,missense_variant|Missense variant,synonymous_variant|Synonymous variant,non_coding_transcript_exon_variant|Non-coding transcript exon variant,no_sequence_alteration|No sequence alteration,splice_region_variant|Splice region variant,frameshift_variant|Frameshift variant,stop_gained|Stop gained,splice_acceptor_variant|Splice acceptor variant,inframe_deletion|Inframe deletion,inframe_insertion|Inframe insertion,splice_donor_variant|Splice donor variant,coding_sequence_variant|Coding sequence variant,initiator_codon_variant|Initiator codon variant,stop_lost|Stop lost,stop_retained_variant|Stop retained variant,intergenic_variant|Intergenic variant
 filterType.ucscClass multipleListOnlyOr
 filterValues.itemRgb 255,,0,,0|Protein-altering and splice variants,0,,128,,0|Synonymous variants,0,,0,,255|Non-coding transcripts or UTR variants,0,,0,,0|Intergenic and intronic variants
 filterLabel.itemRgb General variant types by color grouping
 maxWindowCoverage 250000
 maxItems 1000000
 pennantIcon New red ../goldenPath/newsarch.html#042222 "Released at UCSC April 22, 2022"
 
 searchTable evaSnp
 searchType bigBed
 searchMethod exact
 padding 20
+
+track HLTOGAannotvHg38v1
+release alpha
+bigDataUrl /gbdb/$D/TOGAvHg38v1/HLTOGAannotVsHg38v1.bb
+shortLabel TOGA vs. hg38
+longLabel TOGA annotations using human/hg38 as reference
+group genes
+visibility hide
+itemRgb on
+type bigBed 12
+searchIndex name
+searchTrix  /gbdb/$D/TOGAvHg38v1/HLTOGAannotVsHg38v1.ix
+
+# searchTable HLTOGAannotvsHg38v1BIG
+# searchType bigBed
+# searchMethod fuzzy
+
+track HLTOGAannotvGalGal6v1
+release alpha
+bigDataUrl /gbdb/$D/TOGAvGalGal6v1/HLTOGAannotVsgalGal6v1.bb
+shortLabel TOGA vs. galGal6
+longLabel TOGA annotations using chicken/galGal6 as reference
+group genes
+visibility hide
+itemRgb on
+type bigBed 12
+searchIndex name
+searchTrix  /gbdb/$D/TOGAvGalGal6v1/HLTOGAannotVsgalGal6v1.ix