8eadcb210a91b4c9aefdd603cd91dfea41340f47
markd
  Wed Sep 7 12:08:48 2022 -0700
update bigRmsk doc to point to the new RepeatMasker release

diff --git src/hg/htdocs/goldenPath/help/bigRmsk.html src/hg/htdocs/goldenPath/help/bigRmsk.html
index e89362c..72eac77 100755
--- src/hg/htdocs/goldenPath/help/bigRmsk.html
+++ src/hg/htdocs/goldenPath/help/bigRmsk.html
@@ -38,44 +38,34 @@
   The input files for the bigRmsk files are create from the RepeatMasker <em>*.out</em> and <em>*.align</em> files
   using the <em>rmToTrackHub.pl</em> program that is include with RepeatMasker.  The bigRmsk
   format is not designed to work with any other type of data.
 </p>
 
 
 <h2 id="steps">Creating a bigRmsk track</h2>
 <p>
   To create a bigRmsk track, and its supporting files, follow the below steps.
   This assumes that you have already run RepeatMasker and have a <em>*.out</em>, and
   optionally <em>*.align</em> file.
 </p>
 
 <p>
   RepeatMasker output files are convert to the bigRmsk textual form using the
-  <em>RepeatMasker/util/rmToTrackHub.pl</em> program that is part of the RepeatMasker distribution.
+  <em>RepeatMasker/util/rmToTrackHub.pl</em> program that is part of the
+  <a href="http://www.repeatmasker.org/RepeatMasker/">RepeatMasker 4.1.3 or newer distribution</a>.
 </p>
 <p>
-  NOTE: The current version of RepeatMasker (4.1.2-p1) does not contain the
-  <em>rmToTrackHub.pl</em> program.  Until it is available in, obtain a copy
-  from the RepeatMasker GitHub development branch:
-</p>
-    <pre>
-      <code>
-      git clone -b development git@github.com:rmhubley/RepeatMasker.git
-      </code>
-    </pre>
-
-<p>
   <strong>Step 1.</strong>
   If you wish to experiment with quickly building an example track, download the
   example RepeatMasker output files for the human GRCh38 (hg38) assembly
   <a href="examples/bigRmskExample.out">bigRmskExample.out</a>
   and <a href="examples/bigRmskExample.align">bigRmskExample.align</a>
   used in this tutorial:
   <pre>
     <code>
       wget https://genome.ucsc.edu/goldenPath/help/examples/bigRmskExample.out
       wget https://genome.ucsc.edu/goldenPath/help/examples/bigRmskExample.align
     </code>
   </pre>
 <p>
   Otherwise, substitute your <em>*.out</em> and <em>*.align</em> in theses instructions.
   Generating the alignment bigRmsk file is optional if you don&apos;t have the <em>*.align</em>