Commits for braney

v438_preview2 to v438_base (2022-10-03 to 2022-10-10) v438

13a162ac62b49cf2908da7d0bdd872e3f0010591 Mon Oct 3 11:47:30 2022 -0700

• special case the knownGene track in the table browser until we get bigBed support in the all.joiner structure
  • src/hg/hgTables/filterFields.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTables/schema.c - lines changed 18, context: html, text, full: html, text

48ac5b576269cb2e4a7ded271b3482535a4e98d9 Mon Oct 3 11:51:51 2022 -0700

• short term change to support "old style" knownGene queries in the table browser
  • src/hg/makeDb/trackDb/human/hg38/knownGene.ra - lines changed 1, context: html, text, full: html, text

702cc90549aa4b82a4318d5bfdca9ea55ed732ba Mon Oct 3 14:12:53 2022 -0700

• build URLs into curated assemblies on hubs
  • src/hg/hgConvert/hgConvert.c - lines changed 1, context: html, text, full: html, text

2530ca0451b74a28dcf4abc8edaf10d49c48d6ce Mon Oct 3 14:28:01 2022 -0700

• add option for bigSnp to go into wiggle mode
  • src/hg/lib/hui.c - lines changed 2, context: html, text, full: html, text

5a6c13c718520069fb7f74c633ab7192aaf04231 Mon Oct 3 17:04:22 2022 -0700

• default to using "public" if no curatedHubPrefix is set
  • src/hg/lib/hubConnect.c - lines changed 14, context: html, text, full: html, text

67e90fa07dafa6a5afe8d7eac8435064252a1b9e Wed Oct 5 13:48:43 2022 -0700

• make sure that hgGateway JSON support doesn't assume that a db is a mySQL database when looking for a geneSuggest track
  • src/hg/hgGateway/hgGateway.c - lines changed 1, context: html, text, full: html, text

361c03dcbf16893e92db9a168c4c976cfd5736e7 Wed Oct 5 16:31:47 2022 -0700

• make chromSeqFileExists() do as it says it does and check for the existence of the chromInfo table before querying it.
  • src/hg/lib/chromInfo.c - lines changed 3, context: html, text, full: html, text