f981cdb28308ceeb88a91fa7ea81fe86a8d96ed6 chmalee Mon Oct 3 12:52:00 2022 -0700 Add a hubCheck test for the autoScale setting for bigWigs, refs #30057 diff --git src/hg/utils/hubCheck/hubCheck.c src/hg/utils/hubCheck/hubCheck.c index a912c15..1d524b5 100644 --- src/hg/utils/hubCheck/hubCheck.c +++ src/hg/utils/hubCheck/hubCheck.c @@ -874,30 +874,41 @@ boolean foundTypeError = checkTypeLine(genome, tdb, errors, options); // No point in checking the data file if the type setting is incorrect, // since hubCheckBigDataUrl will error out early with a less clear message // if the type line is messed up. This has the added benefit of providing // consistent messaging on command line interface vs web interface if (!foundTypeError && options->checkFiles) hubCheckBigDataUrl(hub, genome, tdb); if (!sameString(tdb->track, "cytoBandIdeo")) { trackHubAddDescription(genome->trackDbFile, tdb); if (!tdb->html) warn("warning: missing description page for track: '%s'", tdb->track); } + + if (!trackIsContainer && sameString(trackDbRequiredSetting(tdb, "type"), "bigWig")) + { + char *autoScaleSetting = trackDbLocalSetting(tdb, "autoScale"); + if (autoScaleSetting && !sameString(autoScaleSetting, "off") && !sameString(autoScaleSetting, "on")) + { + errAbort("track \"%s\" has value \"%s\" for autoScale setting, " + "valid autoScale values for bigWig tracks are \"off\" or \"on\" only", + trackHubSkipHubName(tdb->track), autoScaleSetting); + } + } } errCatchEnd(errCatch); if (errCatch->gotError || errCatch->gotWarning) { retVal = 1; trackDbErr(errors, errCatch->message->string, genome, tdb, options->htmlOut); if (errCatch->gotError) trackDbErrorCount += 1; } errCatchFree(&errCatch); if (options->htmlOut) { if (trackIsContainer) {