51ddfe5fe097fbbc36b76270a4a1e97ea798fa57
max
  Tue Oct 4 06:22:49 2022 -0700
updating panelAdd trackDb, refs#25568

diff --git src/hg/makeDb/trackDb/human/panelApp.ra src/hg/makeDb/trackDb/human/panelApp.ra
index c731710..a8279c2 100644
--- src/hg/makeDb/trackDb/human/panelApp.ra
+++ src/hg/makeDb/trackDb/human/panelApp.ra
@@ -1,52 +1,54 @@
 track panelApp
 shortLabel PanelApp
 longLabel Genomics England PanelApp Diagnostics
 type bigBed 9 +
 visibility hide
 group phenDis
 pennantIcon New red ../goldenPath/newsarch.html "Released Oct 2022"
 compositeTrack on
 
     track panelAppGenes
     parent panelApp on
-    shortLabel PanelApp Genes Panel
-    longLabel Genomics England PanelApp Genes Panel
+    shortLabel PanelApp Genes
+    longLabel Genomics England PanelApp Genes
     type bigBed 9 +
     visibility pack
     bigDataUrl /gbdb/$D/panelApp/genes.bb
     itemRgb on
-    urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$" publications="$$"
+    url https://panelapp.genomicsengland.co.uk/panels/$<panelID>/gene/$<geneSymbol>/
+    urlLabel Link to PanelApp
+    urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"
     mouseOverField mouseOverField
     labelFields geneSymbol
     skipEmptyFields on
     skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField
     filterValues.confidenceLevel 3,2,1,0
 
     track panelAppTandRep
     parent panelApp on
-    shortLabel PanelApp STRs panel
-    longLabel Genomics England PanelApp Short Tandem Repeats Panel
+    shortLabel PanelApp STRs
+    longLabel Genomics England PanelApp Short Tandem Repeats
     type bigBed 9 +
     visibility pack
     bigDataUrl /gbdb/$D/panelApp/tandRep.bb
     itemRgb on
     urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"
     mouseOverField mouseOverField
     labelFields hgncSymbol
     skipEmptyFields on
     skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField
     filterValues.confidenceLevel 3,2,1,0
 
     track panelAppCNVs
     parent panelApp on
-    shortLabel PanelApp CNV Regions
+    shortLabel PanelApp CNVs
     longLabel Genomics England PanelApp CNV Regions
     type bigBed 9 +
     visibility pack
     bigDataUrl /gbdb/$D/panelApp/cnv.bb
     itemRgb on
     urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" entityName="https://panelapp.genomicsengland.co.uk/panels/entities/$$"
     labelFields entityName
     skipEmptyFields on
     skipFields chrom,chromStart,blockStarts,blockSizes
     filterValues.confidenceLevel 3,2,1,0