7f54f5b04dd45175af6af8ed3d7095c1aefa22b2 hiram Sat Sep 24 18:41:55 2022 -0700 correctly using dbHost in place of hgwdev refs #29982 diff --git src/hg/utils/automation/asmHubChainNetComposite.pl src/hg/utils/automation/asmHubChainNetComposite.pl index 355818b..7904719 100755 --- src/hg/utils/automation/asmHubChainNetComposite.pl +++ src/hg/utils/automation/asmHubChainNetComposite.pl @@ -43,31 +43,31 @@ my %queryCommonName; # key is asmId, value is assembly common name my %querySubmitter; # key is asmId, value is assembly submitter open (TD, "ls -d ${targetBuildDir}/trackData/lastz.*|") or die "can not ls -d ${targetBuildDir}/trackData/lastz.*"; while (my $accession = ) { chomp $accession; $accession =~ s#.*/trackData/lastz.##; # the hubDateName will translate the accessionId into an asmId # side effect it also returns the date my ($qDate, $qAsmName) = &HgAutomate::hubDateName($accession); my $qAsmId = "${accession}"; if ($accession =~ m/^GC/) { $qAsmId = "${accession}${qAsmName}"; } $queryDates{$qAsmId} = $qDate; - my ($qCommonName, undef, $qSubmitter) = &HgAutomate::getAssemblyInfo("hgwdev", $qAsmId); + my ($qCommonName, undef, $qSubmitter) = &HgAutomate::getAssemblyInfo($dbHost, $qAsmId); $queryCommonName{$qAsmId} = $qCommonName; $querySubmitter{$qAsmId} = $qSubmitter; } close (TD); my $ncbiAssemblyId = `grep -v "^#" $namesFile | cut -f10`; chomp $ncbiAssemblyId; my $sciName = `grep -v "^#" $namesFile | cut -f5`; chomp $sciName; my ($tGenome, $tDate, $tSource) = &HgAutomate::getAssemblyInfo($dbHost, $asmId);