7f54f5b04dd45175af6af8ed3d7095c1aefa22b2
hiram
Sat Sep 24 18:41:55 2022 -0700
correctly using dbHost in place of hgwdev refs #29982
diff --git src/hg/utils/automation/asmHubChainNetComposite.pl src/hg/utils/automation/asmHubChainNetComposite.pl
index 355818b..7904719 100755
--- src/hg/utils/automation/asmHubChainNetComposite.pl
+++ src/hg/utils/automation/asmHubChainNetComposite.pl
@@ -43,31 +43,31 @@
my %queryCommonName; # key is asmId, value is assembly common name
my %querySubmitter; # key is asmId, value is assembly submitter
open (TD, "ls -d ${targetBuildDir}/trackData/lastz.*|") or die "can not ls -d ${targetBuildDir}/trackData/lastz.*";
while (my $accession =
) {
chomp $accession;
$accession =~ s#.*/trackData/lastz.##;
# the hubDateName will translate the accessionId into an asmId
# side effect it also returns the date
my ($qDate, $qAsmName) = &HgAutomate::hubDateName($accession);
my $qAsmId = "${accession}";
if ($accession =~ m/^GC/) {
$qAsmId = "${accession}${qAsmName}";
}
$queryDates{$qAsmId} = $qDate;
- my ($qCommonName, undef, $qSubmitter) = &HgAutomate::getAssemblyInfo("hgwdev", $qAsmId);
+ my ($qCommonName, undef, $qSubmitter) = &HgAutomate::getAssemblyInfo($dbHost, $qAsmId);
$queryCommonName{$qAsmId} = $qCommonName;
$querySubmitter{$qAsmId} = $qSubmitter;
}
close (TD);
my $ncbiAssemblyId = `grep -v "^#" $namesFile | cut -f10`;
chomp $ncbiAssemblyId;
my $sciName = `grep -v "^#" $namesFile | cut -f5`;
chomp $sciName;
my ($tGenome, $tDate, $tSource) = &HgAutomate::getAssemblyInfo($dbHost, $asmId);
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