af7fd9fe9619c76334b32d4598ea54bb31d98d4b hiram Wed Sep 28 16:33:16 2022 -0700 better short long lables for hs1 refs #29819 diff --git src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra index 5a1244e..e46b1be 100644 --- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra +++ src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra @@ -1,106 +1,106 @@ ############################################################################## # hs1/ GCA_009914755.4_CHM13_T2T_v2.0 - human - Homo sapiens - taxId: 9606 - primate ############################################################################## track chainNetHs1 compositeTrack on -shortLabel CHM13 T2T Chain/Net -longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0), Chain and Net Alignments +shortLabel hs1/CHM13 T2T Chain/Net +longLabel hs1/CHM13 T2T (Jan. 2022 hs1/GCA_009914755.4_CHM13_T2T_v2.0), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 100.1 color 0,0,0 altColor 100,50,0 type bed 3 sortOrder view=+ matrix 16 90,-330,-236,-356,-330,100,-318,-236,-236,-318,100,-330,-356,-236,-330,90 chainMinScore 5000 chainLinearGap medium matrixHeader A, C, G, T otherDb hs1 html chainNet track chainNetHs1Viewchain shortLabel Chain view chain visibility pack parent chainNetHs1 spectrum on track chainHs1 parent chainNetHs1Viewchain subGroups view=chain - shortLabel CHM13 T2T Chain - longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Chained Alignments + shortLabel hs1/CHM13 T2T Chain + longLabel hs1/CHM13 T2T (Jan. 2022 hs1/GCA_009914755.4_CHM13_T2T_v2.0) Chained Alignments type bigChain hs1 bigDataUrl /gbdb/$D/chainNet/$D.chainHs1.bb linkDataUrl /gbdb/$D/chainNet/$D.chainHs1Link.bb track chainSynHs1 parent chainNetHs1Viewchain subGroups view=chain - shortLabel CHM13 T2T Chain - longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Chained Alignments + shortLabel hs1/CHM13 T2T Chain + longLabel hs1/CHM13 T2T (Jan. 2022 hs1/GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Chained Alignments type bigChain hs1 bigDataUrl /gbdb/$D/chainNet/$D.chainSynHs1.bb linkDataUrl /gbdb/$D/chainNet/$D.chainSynHs1Link.bb track chainRBestHs1 parent chainNetHs1Viewchain subGroups view=chain - shortLabel CHM13 T2T Chain - longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Chained Alignments + shortLabel hs1/CHM13 T2T Chain + longLabel hs1/CHM13 T2T (Jan. 2022 hs1/GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Chained Alignments type bigChain hs1 bigDataUrl /gbdb/$D/chainNet/$D.chainRBestHs1.bb linkDataUrl /gbdb/$D/chainNet/$D.chainRBestHs1Link.bb track mafNetHs1Viewnet shortLabel Net view net visibility full parent chainNetHs1 track netHs1 parent mafNetHs1Viewnet subGroups view=net - shortLabel CHM13 T2T mafNet - longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) mafNet Alignment + shortLabel hs1/CHM13 T2T mafNet + longLabel hs1/CHM13 T2T (Jan. 2022 hs1/GCA_009914755.4_CHM13_T2T_v2.0) mafNet Alignment type bigMaf bigDataUrl /gbdb/$D/chainNet/$D.hs1.net.bb summary /gbdb/$D/chainNet/$D.hs1.net.summary.bb speciesOrder hs1 speciesLabels hs1="CHM13 T2T" track synNetHs1 parent mafNetHs1Viewnet subGroups view=net - shortLabel CHM13 T2T mafNet - longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Net Alignment + shortLabel hs1/CHM13 T2T mafNet + longLabel hs1/CHM13 T2T (Jan. 2022 hs1/GCA_009914755.4_CHM13_T2T_v2.0) Syntenic Net Alignment type bigMaf bigDataUrl /gbdb/$D/chainNet/$D.hs1.synNet.bb summary /gbdb/$D/chainNet/$D.hs1.synNet.summary.bb speciesOrder hs1 speciesLabels hs1="CHM13 T2T" track rbestNetHs1 parent mafNetHs1Viewnet subGroups view=net - shortLabel CHM13 T2T mafNet - longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Net Alignment + shortLabel hs1/CHM13 T2T mafNet + longLabel hs1/CHM13 T2T (Jan. 2022 hs1/GCA_009914755.4_CHM13_T2T_v2.0) Reciprocal Best Net Alignment type bigMaf bigDataUrl /gbdb/$D/chainNet/$D.hs1.rbestNet.bb summary /gbdb/$D/chainNet/$D.hs1.rbestNet.summary.bb speciesOrder hs1 speciesLabels hs1="CHM13 T2T" ############################################################################## # GCA_009914755.4_CHM13_T2T_v2.0 - human - Homo sapiens - taxId: 9606 - primate ############################################################################## track chainNetGCA_009914755.4 compositeTrack on shortLabel CHM13 T2T Chain/Net longLabel CHM13 T2T (Jan. 2022 GCA_009914755.4_CHM13_T2T_v2.0), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks