dc4322ce21733176ef6b04f060f15c6a3c7c773a hiram Thu Sep 29 12:09:25 2022 -0700 moving the reading of rmsk .out files into library function refs #29819 diff --git src/inc/repMask.h src/inc/repMask.h index 6e25563..19ee71a 100644 --- src/inc/repMask.h +++ src/inc/repMask.h @@ -40,17 +40,20 @@ /* Free a single dynamically allocated repeatMaskOut such as created * with repeatMaskOutLoad(). */ void repeatMaskOutFreeList(struct repeatMaskOut **pList); /* Free a list of dynamically allocated repeatMaskOut's */ void repeatMaskOutOutput(struct repeatMaskOut *el, FILE *f, char sep, char lastSep); /* Print out repeatMaskOut. Separate fields with sep. Follow last field with lastSep. */ #define repeatMaskOutTabOut(el,f) repeatMaskOutOutput(el,f,'\t','\n'); /* Print out repeatMaskOut as a line in a tab-separated file. */ #define repeatMaskOutCommaOut(el,f) repeatMaskOutOutput(el,f,',',','); /* Print out repeatMaskOut as a comma separated list including final comma. */ +struct lineFile *rmskLineFileOpen(char *fileName); +/* open a repeat masker .out file or die trying */ + #endif /* REPMASK_H */