b699b06e04864f35702fbb42cbd20fdf9e67420c
max
  Fri Sep 30 08:42:24 2022 -0700
panelApp trackDb file, refs #25568

diff --git src/hg/makeDb/trackDb/human/panelApp.ra src/hg/makeDb/trackDb/human/panelApp.ra
new file mode 100644
index 0000000..8a293a0
--- /dev/null
+++ src/hg/makeDb/trackDb/human/panelApp.ra
@@ -0,0 +1,52 @@
+track panelApp
+shortLabel PanelApp
+longLabel Genomics England PanelApp Diagnostics
+type bigBed 9 +
+visibility hide
+group phenDis
+pennantIcon New red ../goldenPath/newsarch.html "Released Oct 2022"
+compositeTrack on
+
+    track panelAppGenes
+    parent panelApp on
+    shortLabel PanelApp Genes Panel
+    longLabel Genomics England PanelApp Genes Panel
+    type bigBed 9 +
+    visibility pack
+    bigDataUrl /gbdb/$D/panelApp/genes.bb
+    itemRgb on
+    urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"
+    mouseOverField mouseOverField
+    labelFields geneSymbol
+    skipEmptyFields on
+    skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField
+    filterValues.confidenceLevel 3,2,1,0
+
+    track panelAppTandRep
+    parent panelApp on
+    shortLabel PanelApp STRs panel
+    longLabel Genomics England PanelApp Short Tandem Repeats Panel
+    type bigBed 9 +
+    visibility pack
+    bigDataUrl /gbdb/$D/panelApp/tandRep.bb
+    itemRgb on
+    urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"
+    mouseOverField mouseOverField
+    labelFields hgncSymbol
+    skipEmptyFields on
+    skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField
+    filterValues.confidenceLevel 3,2,1,0
+
+    track panelAppCNVs
+    parent panelApp on
+    shortLabel PanelApp CNV Regions
+    longLabel Genomics England PanelApp CNV Regions
+    type bigBed 9 +
+    visibility pack
+    bigDataUrl /gbdb/$D/panelApp/cnv.bb
+    itemRgb on
+    urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" entityName="https://panelapp.genomicsengland.co.uk/panels/entities/$$"
+    labelFields entityName
+    skipEmptyFields on
+    skipFields chrom,chromStart,blockStarts,blockSizes
+    filterValues.confidenceLevel 3,2,1,0