f94190412d16ea558ace1ec9ea175db39aaa104b max Fri Sep 30 08:40:43 2022 -0700 panelApp otto job, refs #25568 diff --git src/hg/utils/otto/panelApp/cnv.as src/hg/utils/otto/panelApp/cnv.as new file mode 100644 index 0000000..3246238 --- /dev/null +++ src/hg/utils/otto/panelApp/cnv.as @@ -0,0 +1,37 @@ +table hg38 +"Region Genes with color and attributes" +( +string chrom; "Reference sequence chromosome or scaffold" +uint chromStart; "Start position of feature on chromosome" +uint chromEnd; "End position of feature on chromosome" +string name; "Name of gene" +uint score; "Score" +char[1] strand; "+ or - for strand" +uint thickStart; "Coding region start" +uint thickEnd; "Coding region end" +uint itemRgb; "Color based on confidence level" +string blockCount; "Number of gene entry" +string blockSizes; "Size of gene" +string blockStarts; "Block begins at first chromStart" +string confidenceLevel; "Confidence Level" +string panelName; "Panel Name" +string panelID; "Panel ID" +string entityName; "Entity Name" +string entityType; "Entity Type" +string evidence; "Evidence" +string clinGenHaploinsufficiencyScore; "ClinGen Haploinsufficiency Score" +string modeOfInheritance; "Mode of Inheritance" +string diseaseGroup; "Disease Group" +string diseaseSubgroup; "Disease Subgroup" +lstring relevantDisorders; "Relevant Disorders" +lstring status; "Status" +lstring types; "Types" +string versionCreated; "Date of Creation" +string penetrance; "Penetrance" +lstring phenotypes; "Phenotypes" +string publications; "PubMed ID" +string triplosensitivityScore; "Triplosensitivity Score" +string typesOfVariants; "Type of Variants" +string verboseName; "Verbose Name" +lstring mouseOverField; "Mouse over field displaying Gene Name, Inheritance, Phenotypes, Confidence Level" +)