6efc703aec6bbfaeb2c1550f1cb45b3771629f86 lrnassar Mon Oct 24 17:05:08 2022 -0700 Updating documentation from 'My Hubs' to the new name 'Connected Hubs' refs #29870 diff --git src/hg/htdocs/goldenPath/help/gbib.html src/hg/htdocs/goldenPath/help/gbib.html index 209ad5c..021f59e 100755 --- src/hg/htdocs/goldenPath/help/gbib.html +++ src/hg/htdocs/goldenPath/help/gbib.html @@ -428,31 +428,31 @@
GBiB shared

To check if your folders are shared, type this address into your web browser: http://127.0.0.1:1234/folders. It should show all shared folders. To obtain the bigDataUrl of any of the files in your shared folders, right-click on any file and select "Copy link address". You can now paste this URL into the Add Custom Tracks page. Or, if you are uploading a track or assembly hub, right-click on your "hub.txt" file and select -"Copy link address". You can now paste this URL into the box on the "My Hubs" +"Copy link address". You can now paste this URL into the box on the "Connected Hubs" tab of the Track Data Hubs page.

Example: Loading a local BAM custom track

Here is an example of a custom track in a shared test/ folder that loads a locally hosted BAM file when pasted on the custom tracks page (select My Data >> Custom Tracks in the Genome Browser menu): 

track type=bam name=BamExample bigDataUrl=http://127.0.0.1:1234/folders/test/bamExample.bam

To customize this URL for your own use, replace the URL with a pasted URL to files from your own machine discoverable under the My Data >> GBiB Shared Data Folder in the Genome Browser menu. Since the GBiB is configured so that the VirtualBox shared folder path can be placed directly into the custom track page (via a line udc.localDir=/folders in the hg.conf file) and there is software that knows files ending in .bam should be loaded as type=bam,