6efc703aec6bbfaeb2c1550f1cb45b3771629f86 lrnassar Mon Oct 24 17:05:08 2022 -0700 Updating documentation from 'My Hubs' to the new name 'Connected Hubs' refs #29870 diff --git src/hg/htdocs/goldenPath/help/gbib.html src/hg/htdocs/goldenPath/help/gbib.html index 209ad5c..021f59e 100755 --- src/hg/htdocs/goldenPath/help/gbib.html +++ src/hg/htdocs/goldenPath/help/gbib.html @@ -428,31 +428,31 @@ </ol> </div> <!-- Right column --> <div class="col-md-8"> <img src="../../images/gbib-shared.png" alt="GBiB shared" width="683" height="465"> </div> </div> <p> To check if your folders are shared, type this address into your web browser: <a href="http://127.0.0.1:1234/folders" target="_blank">http://127.0.0.1:1234/folders</a>. It should show all shared folders. To obtain the bigDataUrl of any of the files in your shared folders, right-click on any file and select "Copy link address". You can now paste this URL into the <a href="../../cgi-bin/hgCustom" target="_blank">Add Custom Tracks</a> page. Or, if you are uploading a track or assembly hub, right-click on your "hub.txt" file and select -"Copy link address". You can now paste this URL into the box on the "My Hubs" +"Copy link address". You can now paste this URL into the box on the "Connected Hubs" tab of the <a href="../../cgi-bin/hgHubConnect" target="_blank">Track Data Hubs</a> page.</p> <a name="loadBam"></a> <h3><em>Example: Loading a local BAM custom track</em></h3> <p> Here is an example of a custom track in a shared test/ folder that loads a locally hosted BAM file when pasted on the custom tracks page (select <em>My Data >> Custom Tracks</em> in the Genome Browser menu): <pre><code>track type=bam name=BamExample bigDataUrl=http://127.0.0.1:1234/folders/test/bamExample.bam </code></pre> <p> To customize this URL for your own use, replace the URL with a pasted URL to files from your own machine discoverable under the <em>My Data >> GBiB Shared Data Folder</em> in the Genome Browser menu. Since the GBiB is configured so that the VirtualBox shared folder path can be placed directly into the custom track page (via a line <code>udc.localDir=/folders</code> in the hg.conf file) and there is software that knows files ending in <code>.bam</code> should be loaded as <code>type=bam</code>,