6efc703aec6bbfaeb2c1550f1cb45b3771629f86
lrnassar
Mon Oct 24 17:05:08 2022 -0700
Updating documentation from 'My Hubs' to the new name 'Connected Hubs' refs #29870
diff --git src/hg/htdocs/goldenPath/help/hubQuickStart.html src/hg/htdocs/goldenPath/help/hubQuickStart.html
index 40d89ca..4512ca2 100755
--- src/hg/htdocs/goldenPath/help/hubQuickStart.html
+++ src/hg/htdocs/goldenPath/help/hubQuickStart.html
@@ -18,31 +18,31 @@
Alternatively, if you do not have wget installed, use curl:
curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hub.txt
curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/genomes.txt
mkdir hg19
cd hg19
curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hg19/trackDb.txt
If you do not have curl, you can alternatively use a text editor and directly recreate the above three files.
Note: there is now a useOneFile on
hub setting that allows the hub
properties to be specified in a single file. More information about this setting can be found on the
Genome Browser User Guide.
STEP 2: Paste your hub.txt link (http://yourURL/hub.txt
) into the
-My Hubs tab of the Track Data Hubs page,
+Connected Hubs tab of the Track Data Hubs page,
then click the "Use Selected Hubs" button. It should work the same as pasting the original
hub.txt file:
http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hub.txt
STEP 3: Congratulations! Your hub should display! If you are not already browsing the hg19 assembly on chr21, change assemblies and navigate to the gene SOD1 to see data displayed for each of the hub's BAM, bigWig, bigBed, and VCF tracks.
If you are having problems, be sure all your files and the hg19 directory are publicly-accessible. For hubs to work, your server must also accept byte-ranges. You can check using the following command to verify "Accept-Ranges: bytes" displays:
curl -I http://yourURL/hub.txt