6efc703aec6bbfaeb2c1550f1cb45b3771629f86 lrnassar Mon Oct 24 17:05:08 2022 -0700 Updating documentation from 'My Hubs' to the new name 'Connected Hubs' refs #29870 diff --git src/hg/htdocs/goldenPath/help/hubQuickStart.html src/hg/htdocs/goldenPath/help/hubQuickStart.html index 40d89ca..4512ca2 100755 --- src/hg/htdocs/goldenPath/help/hubQuickStart.html +++ src/hg/htdocs/goldenPath/help/hubQuickStart.html @@ -18,31 +18,31 @@ Alternatively, if you do not have wget installed, use curl:
curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hub.txt
 curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/genomes.txt
 mkdir hg19
 cd hg19
 curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hg19/trackDb.txt

If you do not have curl, you can alternatively use a text editor and directly recreate the above three files.

Note: there is now a useOneFile on hub setting that allows the hub properties to be specified in a single file. More information about this setting can be found on the Genome Browser User Guide.

STEP 2: Paste your hub.txt link (http://yourURL/hub.txt) into the -My Hubs tab of the Track Data Hubs page, +Connected Hubs tab of the Track Data Hubs page, then click the "Use Selected Hubs" button. It should work the same as pasting the original hub.txt file:

http://genome.ucsc.edu/goldenPath/help/examples/hubDirectory/hub.txt

STEP 3: Congratulations! Your hub should display! If you are not already browsing the hg19 assembly on chr21, change assemblies and navigate to the gene SOD1 to see data displayed for each of the hub's BAM, bigWig, bigBed, and VCF tracks.

If you are having problems, be sure all your files and the hg19 directory are publicly-accessible. For hubs to work, your server must also accept byte-ranges. You can check using the following command to verify "Accept-Ranges: bytes" displays:

curl -I http://yourURL/hub.txt