6efc703aec6bbfaeb2c1550f1cb45b3771629f86 lrnassar Mon Oct 24 17:05:08 2022 -0700 Updating documentation from 'My Hubs' to the new name 'Connected Hubs' refs #29870 diff --git src/hg/htdocs/goldenPath/help/hubQuickStartGroups.html src/hg/htdocs/goldenPath/help/hubQuickStartGroups.html index f477e68..e06e87e 100755 --- src/hg/htdocs/goldenPath/help/hubQuickStartGroups.html +++ src/hg/htdocs/goldenPath/help/hubQuickStartGroups.html @@ -22,31 +22,31 @@
curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubGroupings/hub.txt
 curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubGroupings/genomes.txt
mkdir hg19 cd hg19 curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubGroupings/hg19/trackDb.txt curl -O http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubGroupings/hg19/examplePage.html

If you do not have curl, you can use a text editor and directly recreate the above three files.

Note: there is now a useOneFile on hub setting that allows the hub properties to be specified in a single file. More information about this setting can be found on the Genome Browser User Guide.

STEP 2: Paste your hub.txt link (http://yourURL/hub.txt) into the -My Hubs tab of the Track Data Hubs page, +Connected Hubs tab of the Track Data Hubs page, then click the "Genome Browser" link from the top bar. Alternatively build a URL that will directly load your hub in hgTracks:

http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&hubUrl=http://yourURL/hub.txt

The URL should work the same as using the original data just copied: http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubGroupings/hub.txt

STEP 3: Congratulations! Your hub should display!

If you are having problems, be sure all your files and the hg19 directory are publicly accessible. For hubs to work, your server must also accept byte-ranges. You can check using the following command to verify "Accept-Ranges: bytes" displays:

curl -I http://yourURL/hub.txt