6efc703aec6bbfaeb2c1550f1cb45b3771629f86 lrnassar Mon Oct 24 17:05:08 2022 -0700 Updating documentation from 'My Hubs' to the new name 'Connected Hubs' refs #29870 diff --git src/hg/htdocs/goldenPath/help/hubQuickStartSearch.html src/hg/htdocs/goldenPath/help/hubQuickStartSearch.html index 3a113af..b4f83f8 100755 --- src/hg/htdocs/goldenPath/help/hubQuickStartSearch.html +++ src/hg/htdocs/goldenPath/help/hubQuickStartSearch.html @@ -95,31 +95,31 @@ create an input file for the search indexing command:</p> <pre><code>cat gencode.v32.lncRNAs.genePred | awk '{print $1, $12, $1}' > input.txt</code></pre> <p> To examine or download that file, you can click <a href="examples/hubExamples/hubSearchable/in.txt"> here</a>. Note that the first word is the key referenced in the BED file and the following search terms are associated aliases will be searchable to the location of the key. These search terms are case insensitive and allow partial word searches.</p> <p> Finally you will make the index file (.ix) and the index of that index (.ixx) which helps the search run quickly even in large files.</p> <pre><code>ixIxx input.txt out.ix out.ixx</code></pre> <h3>STEP 4: View and Search</h3> <p> -Enter the URL to your hub on the My Hubs tab of the +Enter the URL to your hub on the Connected Hubs tab of the <a href="../../cgi-bin/hgHubConnect#unlistedHubs">Track Data Hubs</a> page. Alternately, you can enter your hub.txt URL in the following web address:</p> <pre><code>genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&hubUrl=<strong>YourUrlHere</strong></code></pre> <p> If you would like to look at an already-made example, click the following link which includes <code>hideTracks=1</code> to hide other tracks. After the link is a picture of what the hub should look like:</p> <pre><code><a href="../../cgi-bin/hgTracks?db=hg38&hideTracks=1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubSearchable/hub.txt">https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&hideTracks=1&hubUrl=http://genome.ucsc.edu/goldenPath/help/examples/hubExamples/hubSearchable/hub.txt</a></code></pre> <p class='text-center'> <img class='text-center' src="../../images/defaultViewSearchTracks.png" alt="A display of the Searchable hub track" width="1000" height="70"> </p> <p>Once your hub displays, you should be able to type in a gene symbol or Enst ID and scroll down the results