068a98d10ad734d52ac41951bd10dc4222952e67
angie
  Mon Oct 10 16:02:25 2022 -0700
Helper script for pango releases: put pip-compatible tarfiles in a staging directory for eventual hgdownload accessibility.

diff --git src/hg/utils/otto/sarscov2phylo/makePangolinAssignmentRelease.sh src/hg/utils/otto/sarscov2phylo/makePangolinAssignmentRelease.sh
new file mode 100755
index 0000000..10b4db7
--- /dev/null
+++ src/hg/utils/otto/sarscov2phylo/makePangolinAssignmentRelease.sh
@@ -0,0 +1,64 @@
+#!/bin/bash
+set -beEu -o pipefail
+
+usage() {
+    echo "usage: $0 cacheFile versionTag"
+    echo "cacheFile should be .csv.gz and versionTag should be like v1.3"
+}
+
+if [ $# != 2 ]; then
+  usage
+  exit 1
+fi
+
+set -x
+
+cacheFile=$1
+versionTag=$2
+
+releaseDir=/hive/users/angie/pangolin-assignment
+releaseFile=$releaseDir/pangolin-assignment-$versionTag.tar.gz
+
+tmpDir=$(mktemp -d)
+pushd $tmpDir
+
+tarDir=pangolin-assignment-$versionTag
+mkdir -p $tarDir/pangolin_assignment
+
+cat > $tarDir/setup.py <<EOF
+from setuptools import setup, find_packages
+import glob
+import os
+import pkg_resources
+# Note: the _program variable is set in __init__.py.
+# it determines the name of the package/final command line tool.
+from pangolin_assignment import __version__, _program
+
+setup(name='pangolin_assignment',
+      version=__version__,
+      packages=find_packages(),
+      scripts=[],
+      package_data={'pangolin_assignment':['usher_assignments.cache.csv.gz']},
+      description='cached pangolin assignments',
+      url='https://hgdownload.gi.ucsc.edu/goldenPath/wuhCor1/pangolin-assignment',
+      author='cov-lineages group',
+      entry_points="""
+      [console_scripts]
+      {program} = pangolin_assignment.command:main
+      """.format(program = _program),
+      include_package_data=True,
+      keywords=[],
+      zip_safe=False)
+EOF
+
+cat > $tarDir/pangolin_assignment/__init__.py <<EOF
+_program = "pangolin-assignment"
+__version__ = "$versionTag"
+EOF
+
+cp -p $cacheFile $tarDir/pangolin_assignment/usher_assignments.cache.csv.gz
+
+tar cvzf $releaseFile $tarDir
+
+popd
+rm -rf $tmpDir