f3f18ba1ffec58fc4a7811f60b394e0c3d83cbe9
hiram
  Sun Oct 16 20:09:17 2022 -0700
adjuste lower limits for valid hubs in different clades refs $29545

diff --git src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh
index 1a7b672..b0de966 100755
--- src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh
+++ src/hg/makeDb/doc/asmHubs/verifyOnDownload.sh
@@ -11,35 +11,41 @@
 fi
 
 #  printf "usage: ./verifyOnDownload.sh <GCF/012/345/678/GCF_012345678.nn>\n" 1>&2
 #	${toolsDir}/mkSendList.pl ${orderList} | while read F; do \
 #	  ${toolsDir}/verifyOnDownload.sh $$F < /dev/null; done
 
 export host=$1
 export orderList=$2
 export successCount=0
 export doneCount=0
 export fileName=`basename $orderList`
 export subset=${fileName%.orderList.tsv}
 
 export minTrackCount=12
 if [ "${subset}" == "invertebrate" ]; then
-  minTrackCount=10
+  minTrackCount=9
 elif [ "${subset}" == "bacteria" ]; then
   minTrackCount=9
+elif [ "${subset}" == "plants" ]; then
+  minTrackCount=11
+elif [ "${subset}" == "birds" ]; then
+  minTrackCount=11
 elif [ "${subset}" == "mammals" ]; then
   minTrackCount=9
+elif [ "${subset}" == "archaea" ]; then
+  minTrackCount=9
 elif [ "${subset}" == "viral" ]; then
   minTrackCount=7
 fi
 
 # printf "# DBG subset '%s' min: %d\n" "${subset}" "${minTrackCount}" 1>&2
 
 export dbHost="localhost"
 export hubSource="hgdownload-test.gi.ucsc.edu"
 if [ "${host}" = "apibeta.soe.ucsc.edu" ]; then
   hubSource="hgdownload.soe.ucsc.edu"
 fi
 
 export totalTrackCount=0
 
 for dirPath in `~/kent/src/hg/makeDb/doc/asmHubs/mkSendList.pl "${orderList}"`
@@ -72,16 +78,17 @@
                | egrep -v '"'$db'":' | tr -d '"' \
                  | sed -e 's/^ \+//; s/ {//;' | xargs echo | wc -w`
   if [ "${trackCount}" -gt "${minTrackCount}" ]; then
     ((successCount=successCount+1))
     printf "%03d\t%s\t%d tracks:\t" "${doneCount}" "${db}" "${trackCount}"
   else
     printf "%03d\t%s\t%d (error < %d) tracks:\t" "${doneCount}" "${db}" "${trackCount}" "${minTrackCount}"
   fi
   totalTrackCount=`echo $totalTrackCount $trackCount | awk '{print $1+$2}'`
 hgsql -N -e "select organism,description,\",\",scientificName from dbDb where name=\"$db\";" hgcentraltest | tr "'" '_' | xargs echo | sed -e 's/ ,/,/;'
        ;;
   esac
 
 done
 export failCount=`echo $doneCount $successCount | awk '{printf "%d", $1-$2}'`
-printf "# checked %3d hubs, %3d success, %3d fail, total tracks: %d\n" "${doneCount}" "${successCount}" "${failCount}" "${totalTrackCount}"
+export DS=`date "+%F %T"`
+printf "# checked %3d hubs, %3d success, %3d fail, total tracks: %d, %s\n" "${doneCount}" "${successCount}" "${failCount}" "${totalTrackCount}" "${DS}"