fc825ca18eeb99e3807a73d23fd26b614807fa0f markd Tue Oct 11 19:26:06 2022 -0700 add row number of output psl to pslMap mapInfo file to make it easy to sync up the two files diff --git src/utils/pslMap/tests/expected/mrnaMapOver.mapinfo src/utils/pslMap/tests/expected/mrnaMapOver.mapinfo index 22231f3..c82b4c4 100644 --- src/utils/pslMap/tests/expected/mrnaMapOver.mapinfo +++ src/utils/pslMap/tests/expected/mrnaMapOver.mapinfo @@ -1,3 +1,3 @@ -#srcQName srcQStart srcQEnd srcQSize srcTName srcTStart srcTEnd srcStrand srcAligned mappingQName mappingQStart mappingQEnd mappingTName mappingTStart mappingTEnd mappingStrand mappingId mappedQName mappedQStart mappedQEnd mappedTName mappedTStart mappedTEnd mappedStrand mappedAligned qStartTrunc qEndTrunc -NM_009377 0 1757 1757 chr7 137305795 137312986 - 1757 chr7 137305374 137318990 chr11 2141253 2157009 + 0 NM_009377 0 1757 chr11 2141735 2149597 - 1727 0 0 +#srcQName srcQStart srcQEnd srcQSize srcTName srcTStart srcTEnd srcStrand srcAligned mappingQName mappingQStart mappingQEnd mappingTName mappingTStart mappingTEnd mappingStrand mappingId mappedQName mappedQStart mappedQEnd mappedTName mappedTStart mappedTEnd mappedStrand mappedAligned qStartTrunc qEndTrunc mappedPslLine +NM_009377 0 1757 1757 chr7 137305795 137312986 - 1757 chr7 137305374 137318990 chr11 2141253 2157009 + 0 NM_009377 0 1757 chr11 2141735 2149597 - 1727 0 0 0 NM_009377 0 1757 1757 chr7fake 137305795 137312986 - 1757