bbd718a03c8042b1ff26617d7dd2964463e745f4 dschmelt Fri Oct 21 10:43:48 2022 -0700 Final tdb changes for hgnc and panelapp refs #30097, #29891 diff --git src/hg/makeDb/trackDb/human/panelApp.ra src/hg/makeDb/trackDb/human/panelApp.ra index a8279c2..6a3e885 100644 --- src/hg/makeDb/trackDb/human/panelApp.ra +++ src/hg/makeDb/trackDb/human/panelApp.ra @@ -1,54 +1,54 @@ track panelApp shortLabel PanelApp longLabel Genomics England PanelApp Diagnostics type bigBed 9 + visibility hide group phenDis -pennantIcon New red ../goldenPath/newsarch.html "Released Oct 2022" +pennantIcon New red ../goldenPath/newsarch.html#102122 "Released Oct 2022" compositeTrack on track panelAppGenes parent panelApp on shortLabel PanelApp Genes longLabel Genomics England PanelApp Genes type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/genes.bb itemRgb on url https://panelapp.genomicsengland.co.uk/panels/$<panelID>/gene/$<geneSymbol>/ urlLabel Link to PanelApp urls omimGene="https://www.omim.org/entry/$$" ensemblGenes="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$" mouseOverField mouseOverField labelFields geneSymbol skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField filterValues.confidenceLevel 3,2,1,0 track panelAppTandRep parent panelApp on shortLabel PanelApp STRs longLabel Genomics England PanelApp Short Tandem Repeats type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/tandRep.bb itemRgb on urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$" mouseOverField mouseOverField labelFields hgncSymbol skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField filterValues.confidenceLevel 3,2,1,0 track panelAppCNVs parent panelApp on shortLabel PanelApp CNVs longLabel Genomics England PanelApp CNV Regions type bigBed 9 + visibility pack bigDataUrl /gbdb/$D/panelApp/cnv.bb itemRgb on urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" entityName="https://panelapp.genomicsengland.co.uk/panels/entities/$$" labelFields entityName skipEmptyFields on skipFields chrom,chromStart,blockStarts,blockSizes filterValues.confidenceLevel 3,2,1,0