c007c45aa910f36c35e0e774e02a7dd63a2264bf max Mon Oct 17 03:14:56 2022 -0700 bringing git otto crontab in sync with reality, no redmine diff --git src/hg/utils/otto/otto.crontab src/hg/utils/otto/otto.crontab index 7180a58..0bfcfb9 100644 --- src/hg/utils/otto/otto.crontab +++ src/hg/utils/otto/otto.crontab @@ -1,21 +1,32 @@ # DO NOT EDIT THE OTTO CRONTAB FILE DIRECTLY! # This file is in the kent git repository: ~/kent/src/hg/utils/otto/otto.crontab # Please edit and commit changes to the git repository, # and then ssh otto@hgwdev and run crontab on the edited and checked in file, # for example crontab ~lrnassar/kent/src/hg/utils/otto/otto.crontab +# To save the current crontab back into git: +# crontab -l > ~max/kent/src/hg/utils/otto/otto.crontab +# logout +# cd ~max/kent/src/hg/utils/otto/ +# git commit otto.crontab -m 'updating crontab' + + +# Note that you can see the list of auto-pushes of files from hgwdev to the RR by running: +# cat /etc/crontab +# on Hgwdev. + TMPDIR=/data/tmp ottomeister=lrnassar@ucsc.edu #Format: Minute - Hour - DayofMonth month Day-of-week MAILTO=lrnassar@ucsc.edu #Daily sandbox update 41 07 * * 1-5 /cluster/home/otto/bin/sandboxupdate # save shell history and last log into log files in ~/lastLog/ # last day of the month to catch them just before log rotation 38 23 30 4,6,9,11 * ~/lastLog/lastLog.sh 38 23 31 1,3,5,7,8,10,12 * ~/lastLog/lastLog.sh 38 23 28 2 * ~/lastLog/lastLog.sh 38 23 29 2 * ~/lastLog/lastLog.sh @@ -48,38 +59,42 @@ #Orphanet 10 7 10 * * /hive/data/outside/otto/orphanet/orphanetWrapper.sh #ClinVar MAILTO=max@soe.ucsc.edu,lrnassar@ucsc.edu 08 00 8 * * umask 002; /hive/data/outside/otto/clinvar/doUpdate.sh #OMIM 17 4 * * * /hive/data/outside/otto/omim/omimWrapper.sh 2>&1 #LOVD 14 13 * * mon /hive/data/outside/otto/lovd/doUpdate.sh #Mastermind -05 8 8 */3 * /hive/data/outside/otto/mastermind/buildMastermind.sh +05 8 8 * * /hive/data/outside/otto/mastermind/buildMastermind.sh #wuhCor1 uniprot otto cron by Max, May 2021 00 4 * * * /hive/data/outside/otto/uniprot/covidCheck.sh #ClinGen MAILTO=abenet@ucsc.edu,lrnassar@ucsc.edu 00 9 * * * /hive/data/outside/otto/clinGen/clinGenWrapper.sh #GRC Incident MAILTO=lrnassar@ucsc.edu,hiram@soe.ucsc.edu 33 09 * * * /hive/data/outside/otto/grcIncidentDb/runUpdate.sh makeItSo #NCBI RefSeq MAILTO=lrnassar@ucsc.edu,hiram@soe.ucsc.edu 23 8 * * 3 /hive/data/outside/otto/ncbiRefSeq/ottoNcbiRefSeq.sh #OMIM Upload MAILTO=lrnassar@ucsc.edu HGDB_CONF=/cluster/home/otto/.hg.conf.beta 15 05 * * * /hive/data/outside/otto/omim/omimUploadWrapper.sh +MAILTO=bwick@ucsc.edu +# Cell Browser news sec update by Matt/Brittney Sept 2022 +04 12 * * 1-5 ~bwick/cellBrowser/ucsc/updateNewsSec -r + #Format: Minute - Hour - DayofMonth month Day-of-week