2060489b6fa5a1a897ab66d739f0dc4ecc6868f5 gperez2 Fri Nov 18 11:39:13 2022 -0800 Updating news for the new enhanced Genome Browser search, refs #30254 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 29537ad..e02a86a 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -43,30 +43,71 @@
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    Nov. 18, 2022    New enhanced Genome Browser search

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    +We are pleased to announce our enhanced Genome Browser search, which now includes results in our +help docs and public hubs. This new search can be used in the search bar of our +gateway page or the +Genome Browser tracks display page. The search +now finds matches to words in track data, track names, track descriptions, public hub track names, +and public hub descriptions within the current assembly. In addition, it will also find matches in +any of our documentation. The results page also includes a collapsible tree of the search results, +which shows the types of categories for the given search results and the number of matches +available in each category. The search results will belong to one of 5 categories:

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    +Specifically, the matches to knownGene terms will have a short description with the knownGene term +in bold. All categories will show the first 10 hits and can expand up to 500 hits per category. The +checkboxes in the tree can be used to hide or show all the matches belonging to a category.

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    + + TP53 search +
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    +Entering positional coordinates, such as chr2:135,820,191-135,823,087, 2:135820191-135823087, +NC_000002.12:135820191-135823087, or CM000664.2:135820191-135823087, will directly navigate to the +tracks display page at that position. Search terms that have a single result, such as the HGVS +expressions listed in our Querying the Genome Browser page, will automatically redirect you from the +results page to the Genome Browser tracks display page. For more information, see the +Using the Genome Browser Search section at the +bottom of the search results page.

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    +We would like to thank Christopher Lee, Max Haeussler, Daniel Schmelter, Lou Nassar, and Gerardo +Perez for their work on this release.

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    Oct. 31, 2022    UK Biobank Depletion rank score for human

    We are happy to announce the release of the UK Biobank Depletion rank score track for the human assembly (GRCh38/hg38). This track is part of the Constraint score container track that includes several subtracks showing the results of constraint prediction algorithms.

    A variant depletion score was computed for every overlapping set of 500bp windows in the genome with a 50bp step size, and assigned a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least depletion) for each 500bp window. Since the windows are overlapping, only the value in the central 50bp of the 500bp window is plotted. You can learn more about how the data was generated from the track description page.