ed24417ccb2eef22bb8b25cc6726d1d69f315653 gperez2 Mon Nov 14 17:02:44 2022 -0800 Adding a description for nesting dbSNP153, refs #30252 diff --git src/hg/makeDb/trackDb/dbSnpArchive.html src/hg/makeDb/trackDb/dbSnpArchive.html index 6a60c2a..d246bc5 100755 --- src/hg/makeDb/trackDb/dbSnpArchive.html +++ src/hg/makeDb/trackDb/dbSnpArchive.html @@ -1,29 +1,31 @@ <H2>Description</H2> <P> This composite track contains information about single nucleotide polymorphisms (SNPs) and small insertions and deletions (indels) — collectively Simple Nucleotide Polymorphisms — from <A HREF="https://www.ncbi.nlm.nih.gov/SNP/" target=_blank>dbSNP</A>, available from <A HREF="ftp://ftp.ncbi.nih.gov/snp/organisms" target=_blank>ftp.ncbi.nih.gov/snp</A>. You can click into each track for a version/subset-specific description.</P> <P> This collection includes numbered versions of the entire dbSNP datasets (All SNP) as well as three tracks with subsets of the items in that version. Here is information on each of the subsets: <UL> +<LI><B>dbSNP 153:</B> The dbSNP build 153 is composed of 5 subtracks. Click the track for + a description of the subtracks.</LI> <LI><B>Common SNPs:</B> SNPs that have a minor allele frequency of at least 1% and are mapped to a single location in the reference genome assembly. Frequency data are not available for all SNPs, so this subset is incomplete.</LI> <LI><B>Flagged SNPs:</B> SNPs flagged as clinically associated by dbSNP, mapped to a single location in the reference genome assembly, and <em>not</em> known to have a minor allele frequency of at least 1%. Frequency data are not available for all SNPs, so this subset may include some SNPs whose true minor allele frequency is 1% or greater.</LI> <LI><B>Mult. SNPs:</B> SNPs that have been mapped to multiple locations in the reference genome assembly.</LI> </UL> </P> <P> The default maximum <A HREF="#Weight">weight</A> for this track is 1, so unless