5bfb5c9e786ed1a8c77b1d44a06a646831972b01 hiram Fri Nov 18 15:43:53 2022 -0800 add discussion about how to make your track hub appear on a GenArk assembly hub refs #30297 diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index 5df7a0a..0945abe 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -1466,34 +1466,35 @@ GenArk Assembly hub, specify the GenArk assembly name in the genome statement in your hub.txt file as described below. For example, a reference such as:

 genome GCA_021951015.1
 

will direct your track hub to display on the human Feb. 2022 - GCA_021951015.1 - HG002.mat.cur.20211005 genome assembly.

To share your track hub with your audience of interest, when you publish -the URL to your track hub, that genome reference in your track hub.txt -file will cause that associated assembly hub to display in the genome -browser with your track hub annotations on that genome browser. There is no -need to otherwise reference the assembly hub, it will automatically attach +the URL to your track hub, that genome reference in your track +hub.txt file will cause that associated assembly hub to display in the +genome browser with your track hub annotations on that genome browser. There +is no need to otherwise reference the assembly hub, it will automatically +attach itself.

A complete list of all available GenArk assemblies available can be seen in the text file UCSC_GI.assemblyHubList.txt.

Track Hubs in a single file

Historically, a hub needed a set of text files to specify properties for a track hub and each of the data tracks within the hub. The track hub settings were stored in a three file structure: hub.txt, genomes.txt, and trackDb.txt