5bfb5c9e786ed1a8c77b1d44a06a646831972b01 hiram Fri Nov 18 15:43:53 2022 -0800 add discussion about how to make your track hub appear on a GenArk assembly hub refs #30297 diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index 5df7a0a..0945abe 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -1466,34 +1466,35 @@ <a href='https://hgdownload.soe.ucsc.edu/hubs/' target=_blank>GenArk Assembly</a> hub, specify the <em>GenArk</em> assembly name in the <b>genome</b> statement in your <b>hub.txt</b> file as <a href='#UseOneFile'>described below</a>. For example, a reference such as: </p> <pre> genome GCA_021951015.1 </pre> <p> will direct your track hub to display on the human <b>Feb. 2022 - GCA_021951015.1 - HG002.mat.cur.20211005</b> genome assembly. </p> <p> To share your track hub with your audience of interest, when you publish -the URL to your track hub, that <b>genome</b> reference in your track hub.txt -file will cause that associated assembly hub to display in the genome -browser with your track hub annotations on that genome browser. There is no -need to otherwise reference the assembly hub, it will automatically attach +the URL to your track hub, that <b>genome</b> reference in your track +<b>hub.txt</b> file will cause that associated assembly hub to display in the +genome browser with your track hub annotations on that genome browser. There +is no need to otherwise reference the assembly hub, it will automatically +attach itself. </p> <p> A complete list of all available <em>GenArk</em> assemblies available can be seen in the text file <a href='https://hgdownload.soe.ucsc.edu/hubs/UCSC_GI.assemblyHubList.txt' target=_blank>UCSC_GI.assemblyHubList.txt</a>. </p> <a name="UseOneFile"></a> <h2>Track Hubs in a single file</h2> <p> Historically, a hub needed a set of text files to specify properties for a track hub and each of the data tracks within the hub. The track hub settings were stored in a three file structure: hub.txt, genomes.txt, and trackDb.txt</p>