71e09012455a01c07dd7953e16044361a287496a hiram Fri Nov 18 13:59:00 2022 -0800 now indicating chromAuthority ucsc on those browsers that can do that refs #30297 diff --git src/hg/makeDb/doc/asmHubs/asmHubs.mk src/hg/makeDb/doc/asmHubs/asmHubs.mk index 1b16d83..2dca643 100644 --- src/hg/makeDb/doc/asmHubs/asmHubs.mk +++ src/hg/makeDb/doc/asmHubs/asmHubs.mk @@ -8,31 +8,31 @@ # statsName, testStatsName, dataName, testDataName, genomesTxt, hubFile # testHubFile, Name and name toolsDir=${HOME}/kent/src/hg/makeDb/doc/asmHubs htdocsHgDownload=/usr/local/apache/htdocs-hgdownload hubsDownload=${htdocsHgDownload}/hubs/${name} asmHubSrc=/hive/data/genomes/asmHubs/${name} all:: makeDirs mkGenomes symLinks hubIndex asmStats trackData hubTxt groupsTxt makeDirs: mkdir -p ${destDir} mkGenomes:: ${toolsDir}/mkGenomes.pl dynablat-01 4040 ${orderList} > ${destDir}/${genomesTxt}.txt - ${toolsDir}/mkGenomes.pl dynablat-01 4040 ${orderList} > ${destDir}/download.${genomesTxt}.txt + cp -p ${destDir}/${genomesTxt}.txt ${destDir}/download.${genomesTxt}.txt symLinks:: ${toolsDir}/mkSymLinks.pl ${orderList} @[ -d ${hubsDownload} ] && true || mkdir ${hubsDownload} @for html in ${indexName} ${statsName} ${dataName} ; do \ [ -L ${hubsDownload}/$${html}.html ] && true || ln -s ${asmHubSrc}/$${html}.html ${hubsDownload} ; \ [ -L ${hubsDownload}/download.$${html}.html ] && true || ln -s ${asmHubSrc}/download.$${html}.html ${hubsDownload} ; \ done @for txt in groups hub genomes download.genomes ; do \ [ -L ${hubsDownload}/$${txt}.txt ] && true || ln -s ${asmHubSrc}/$${txt}.txt ${hubsDownload} ; \ done hubIndex:: rm -f ${destDir}/${testIndexName}.html ${destDir}/${indexName}.html ${destDir}/download.${indexName}.html ${toolsDir}/mkHubIndex.pl ${Name} ${name} ${defaultAssembly} ${orderList} | sed -e 's#${name}/hub.txt#${name}/${hubFile}.txt#;' > ${destDir}/download.${indexName}.html