9a4bfeab44e7c3575ae10059fc069192c1165126
markd
  Fri Nov 18 15:57:26 2022 -0800
improve error message by when bedToBigBed is given magic name stdin

diff --git src/utils/bedToBigBed/tests/makefile src/utils/bedToBigBed/tests/makefile
index 8747f8f..53f450b 100644
--- src/utils/bedToBigBed/tests/makefile
+++ src/utils/bedToBigBed/tests/makefile
@@ -1,20 +1,20 @@
 kentSrc = ../../..
 A = bedToBigBed
 include ../../../inc/common.mk
 
-test: testRgb testNotSorted testMultiInsAtEnd itemsRgb tabSep testBadChrom1 testBbSize1 testBbSize2
+test: testRgb testNotSorted testMultiInsAtEnd itemsRgb tabSep testBadChrom1 testBbSize1 testBbSize2 testDevStdin testStdin
 
 testBadChrom1:  outputDir
 	-${BINDIR}/${A} input/colored.genbank.bed input/human.chrom.sizes.txt output/noFile.chromAlias.bb   -tab -type=bed12+13 -as=input/bigGenePred.as 2> output/testBadChrom1.err
 	diff expected/testBadChrom1.err output/testBadChrom1.err
 
 output/human.chromAlias.bb:  outputDir
 	${BINDIR}/${A} input/human.chromAlias.bed input/human.chrom.sizes.txt output/human.chromAlias.bb   -tab -type=bed3+4 -as=input/chromAliasIndex.as -extraIndex=genbank,ensembl,ncbi,ucsc
 
 testBbSize1: outputDir output/human.chromAlias.bb
 	${BINDIR}/${A} input/colored.genbank.bed output/human.chromAlias.bb output/colored.genbank.bb -sizesIsChromAliasBb -tab -type=bed12+13 -as=input/bigGenePred.as 
 	bigBedToBed output/colored.genbank.bb output/colored.genbank.bed
 	diff input/colored.genbank.bed output/colored.genbank.bed
 
 testBbSize2: outputDir output/human.chromAlias.bb
 	-${BINDIR}/${A} input/mixed.bed output/human.chromAlias.bb output/noFile.chromAlias.bb -sizesIsChromAliasBb -tab -type=bed12+13 -as=input/bigGenePred.as 2> output/mixed.err
@@ -53,21 +53,30 @@
 	${BINDIR}/${A} -type=bed12 input/itemRgbBed12.bed input/chrom.sizes output/itemRgbBed12.bb 2> /dev/null
 	bigBedToBed output/itemRgbBed12.bb output/test_itemRgbBed12.bed
 	diff input/itemRgbBed12.bed output/test_itemRgbBed12.bed
 	${BINDIR}/${A} -type=bed12 -as=input/reservedBed12.as input/itemRgbBed12.bed input/chrom.sizes output/itemRgbBed12.bb 2> /dev/null
 	bigBedToBed output/itemRgbBed12.bb output/test_itemRgbBed12.bed
 	diff input/itemRgbBed12.bed output/test_itemRgbBed12.bed
 	${BINDIR}/${A} -type=bed12 -as=input/itemRgbBed12.as input/itemRgbBed12.bed input/chrom.sizes output/itemRgbBed12.bb 2> /dev/null
 	bigBedToBed output/itemRgbBed12.bb output/test_itemRgbBed12.bed
 	diff input/itemRgbBed12.bed output/test_itemRgbBed12.bed
 
 tabSep: outputDir
 	${BINDIR}/${A} -tab -type=bed4 -as=input/tabSep.as input/tabSep.bed input/chrom.sizes output/tabSep.bb 2> /dev/null
 	bigBedToBed output/tabSep.bb output/test_tabSep.bed
 	diff input/tabSep.bed output/test_tabSep.bed
 
+testDevStdin: outputDir
+	-cat input/itemRgb.bed | ${BINDIR}/${A} -type=bed9 -as=input/itemRgb.as /dev/stdin input/chrom.sizes output/$@.bb 2> output/$@.err
+	diff expected/$@.err output/$@.err
+
+testStdin: outputDir
+	-cat input/itemRgb.bed | ${BINDIR}/${A} -type=bed9 -as=input/itemRgb.as stdin input/chrom.sizes output/$@.bb 2> output/$@.err
+	diff expected/$@.err output/$@.err
+
+
 
 clean::
 	@rm -rf output
 
 outputDir:
 	@${MKDIR} -p output