ff4257af63b8ef729573df54c879eb05876b26ed dschmelt Wed Nov 2 10:51:48 2022 -0700 Adding note about the bug in refs# 30212 diff --git src/hg/makeDb/trackDb/human/panelApp.html src/hg/makeDb/trackDb/human/panelApp.html index 9508b66..93cf20b 100644 --- src/hg/makeDb/trackDb/human/panelApp.html +++ src/hg/makeDb/trackDb/human/panelApp.html @@ -16,31 +16,34 @@ <a href="https://panelapp.genomicsengland.co.uk/panels/entities/" target="_blank">Genes and genomic entities</a> (short tandem repeats/STRs and copy number variants/CNVs) have been reviewed by experts to enable a community consensus to be reached on which genes and genomic entities should appear on a <b>diagnostics grade panel</b> for each disorder. A <b>rating system</b> (confidence level 0 - 3) is used to classify the level of evidence supporting association with phenotypes covered by the gene panel in question. </p> <p> The available data tracks are: </p> <ul> <li> <b>Genomics England PanelApp Genes (PanelApp Genes):</b> <br> - shows genes with evidence supporting a gene-disease relationship.</li> + shows genes with evidence supporting a gene-disease relationship. + <p style="color:red">NOTE: Due to a bug in the PanelApp gene API, between + 5 and 20% of gene entries are missing as of 11/2/22.</p> +</li> <br> <li> <b>Genomics England PanelApp STRs (PanelApp STRs):</b> <br> shows short tandem repeats that can be disease-causing when a particular number of repeats is present.</li> <br> <li> <b>Only on hg38: Genomics England PanelApp Regions (PanelApp CNV Regions):</b> <br> shows copy-number variants (region-loss and region-gain) with evidence supporting a gene-disease relationship.</li> </ul> <h2>Display Conventions</h2>