622669affcb25b3fe27c6f3ec188a01ec35b6f58 markd Thu Nov 3 11:07:28 2022 -0700 got Ensembl version wrong diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt index 9deeec4..5d42d40 100644 --- src/hg/makeDb/doc/hg38/gencode.txt +++ src/hg/makeDb/doc/hg38/gencode.txt @@ -1125,34 +1125,35 @@ # download, build and load tables mkdir -p /hive/data/genomes/hg38/bed/gencodeV42/hgcImport pushd /hive/data/genomes/hg38/bed/gencodeV42/hgcImport # get initial version of transcript_rankings, # http://ftp.ebi.ac.uk/pub/databases/havana/gencode_pre/Gencode_human/release_42/gencode.v42.transcript_rankings.txt.gz (time nice make -O -j 32 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb - ../outside/gencode/bin/gencodeGenerateTrackDbs hg38 42 107 'Oct 2022' + ../outside/gencode/bin/gencodeGenerateTrackDbs hg38 42 108 'Oct 2022' # Update 'Release Notes' (for final) # human/hg38/wgEncodeGencodeSuper.html # edit human/hg38/trackDb.gencode.ra to remove alpha # edit all.joiner to add ~/tmp/gencodeV42.joiner jkmake DBS=hg38 # check joiner pushd /hive/data/genomes/hg38/bed/gencodeV42/hgcImport make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck # check tracks in browser sandbox # commit all jkmake DBS=hg38 alpha +#########################################################################