e863249eae18325e041c2948722b98cb5a5643e4
markd
  Fri Nov 4 14:47:29 2022 -0700
Dropped GENCODE 2-way pseudogenes from latest releases.  These should have never been included

diff --git src/hg/makeDb/schema/all.joiner src/hg/makeDb/schema/all.joiner
index 08e817d..fbc220c 100644
--- src/hg/makeDb/schema/all.joiner
+++ src/hg/makeDb/schema/all.joiner
@@ -3472,31 +3472,30 @@
 "Link together Gencode UniProt Support table with Attributes table"
     hg38.wgEncodeGencodeEntrezGeneV41.transcriptId dupeOk
     hg38.wgEncodeGencodeEntrezGeneV41.transcriptId minCheck=0.35
 
 identifier wgEncodeGencodeExonSupportV41
 "Link together Gencode Exon Support table with Attributes table"
     hg38.wgEncodeGencodeExonSupportV41.transcriptId dupeOk
     hg38.wgEncodeGencodeAttrsV41.transcriptId minCheck=0.80
 
 # end Gencode V41
 
 # begin Gencode V42
 
 # gencode genePred tables with no associations
 # wgEncodeGencodePolyaV42
-# wgEncodeGencode2wayConsPseudoV42
 
 # gencode genePred tables with joining through wgEncodeGencodeAttrsV42
 identifier wgEncodeGencodeBasicAttrsV42
 "Link together Gencode Basic Table with Attributes table"
     hg38.wgEncodeGencodeAttrsV42.transcriptId
     hg38.wgEncodeGencodeBasicV42.name
 
 identifier wgEncodeGencodeCompAttrsV42
 "Link together Gencode Comprehensive Table with Attributes table"
     hg38.wgEncodeGencodeAttrsV42.transcriptId
     hg38.wgEncodeGencodeCompV42.name
 
 identifier wgEncodeGencodePseudoGeneAttrsV42
 "Link together Gencode PseudoGene Table with Attributes table"
     hg38.wgEncodeGencodeAttrsV42.transcriptId
@@ -5101,31 +5100,30 @@
 "Link together Gencode Annotation Remark table with Attributes table"
     hg19.wgEncodeGencodeAnnotationRemarkV41lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeAttrsV41lift37.transcriptId minCheck=0.10
 
 identifier wgEncodeGencodeEntrezGeneV41lift37
 "Link together Gencode UniProt Support table with Attributes table"
     hg19.wgEncodeGencodeEntrezGeneV41lift37.transcriptId dupeOk
     hg19.wgEncodeGencodeEntrezGeneV41lift37.transcriptId minCheck=0.35
 
 # end Gencode V41lift37
 
 # begin Gencode V42lift37
 
 # gencode genePred tables with no associations
 # wgEncodeGencodePolyaV42lift37
-# wgEncodeGencode2wayConsPseudoV42lift37
 
 # gencode genePred tables with joining through wgEncodeGencodeAttrsV42lift37
 identifier wgEncodeGencodeBasicAttrsV42lift37
 "Link together Gencode Basic Table with Attributes table"
     hg19.wgEncodeGencodeAttrsV42lift37.transcriptId
     hg19.wgEncodeGencodeBasicV42lift37.name
 
 identifier wgEncodeGencodeCompAttrsV42lift37
 "Link together Gencode Comprehensive Table with Attributes table"
     hg19.wgEncodeGencodeAttrsV42lift37.transcriptId
     hg19.wgEncodeGencodeCompV42lift37.name
 
 identifier wgEncodeGencodePseudoGeneAttrsV42lift37
 "Link together Gencode PseudoGene Table with Attributes table"
     hg19.wgEncodeGencodeAttrsV42lift37.transcriptId
@@ -7176,31 +7174,30 @@
 "Link together Gencode UniProt Support table with Attributes table"
     mm39.wgEncodeGencodeEntrezGeneVM30.transcriptId dupeOk
     mm39.wgEncodeGencodeEntrezGeneVM30.transcriptId minCheck=0.35
 
 identifier wgEncodeGencodeExonSupportVM30
 "Link together Gencode Exon Support table with Attributes table"
     mm39.wgEncodeGencodeExonSupportVM30.transcriptId dupeOk
     mm39.wgEncodeGencodeAttrsVM30.transcriptId minCheck=0.80
 
 # end Gencode VM30
 
 # begin Gencode VM31
 
 # gencode genePred tables with no associations
 # wgEncodeGencodePolyaVM31
-# wgEncodeGencode2wayConsPseudoVM31
 
 # gencode genePred tables with joining through wgEncodeGencodeAttrsVM31
 identifier wgEncodeGencodeBasicAttrsVM31
 "Link together Gencode Basic Table with Attributes table"
     mm39.wgEncodeGencodeAttrsVM31.transcriptId
     mm39.wgEncodeGencodeBasicVM31.name
 
 identifier wgEncodeGencodeCompAttrsVM31
 "Link together Gencode Comprehensive Table with Attributes table"
     mm39.wgEncodeGencodeAttrsVM31.transcriptId
     mm39.wgEncodeGencodeCompVM31.name
 
 identifier wgEncodeGencodePseudoGeneAttrsVM31
 "Link together Gencode PseudoGene Table with Attributes table"
     mm39.wgEncodeGencodeAttrsVM31.transcriptId