ca39d76b0c4deafcb785e8bea631d316b3bb59ed
markd
  Fri Oct 28 21:28:51 2022 -0700
import of GENCODE V42 final release with addition of transcript rankings

diff --git src/hg/lib/encode/wgEncodeGencodeAttrs.as src/hg/lib/encode/wgEncodeGencodeAttrs.as
index 0186796..27089b0 100644
--- src/hg/lib/encode/wgEncodeGencodeAttrs.as
+++ src/hg/lib/encode/wgEncodeGencodeAttrs.as
@@ -1,18 +1,19 @@
 table wgEncodeGencodeAttrs
 "Basic set of attributes associated with all Gencode transcripts."
     (
     string geneId; "Gene identifier"
     string geneName; "Gene name"
     string geneType; "BioType of gene"
     string geneStatus; "Status of gene (obsolete)"
     string transcriptId; "Transcript identifier"
     string transcriptName; "Transcript name"
     string transcriptType; "BioType of transcript"
     string transcriptStatus; "Status of transcript (obsolete)"
     string havanaGeneId; "HAVANA identifier if gene is in HAVANA"
     string havanaTranscriptId; "HAVANA identifier if transcript is in HAVANA"
     string ccdsId; "CCDS identifier if transcript is in CCDS"
     int level; "GENCODE level: 1 = experimental confirmed, 2 = manual, 3 = automated"
     string transcriptClass; "high level type of transcript"
     string proteinId; "Protein identifier (not loaded on many older versions of GENCODE)"
+    int transcriptRank; "Rank of transcript within the gene, smaller is more preferred"
     )