File Changes for angie

v440_preview to v440_preview2 (2022-11-07 to 2022-11-14) v440

• src/hg/hgPhyloPlace/phyloPlace.c
  • lines changed 26, context: html, text, full: html, text
    d354f7c4ff9867b3a64ecaadba87ba2381371e27 Mon Nov 7 16:46:38 2022 -0800
    In Nextstrain view (JSON), show the Nextstrain clade and Pango lineage assigned by usher for uploaded samples. Make Pango lineage the default coloring, and add a filter to highlight uploaded samples so user immediately sees the uploaded samples' lineage(s) and placement in the subtree. Also, for uploaded names/IDs, don't truncate at first comma until we check whether line is a list of IDs / ID ranges.
• src/hg/hgPhyloPlace/phyloPlace.h
  • lines changed 1, context: html, text, full: html, text
    3b1a8fdcbd590a86ff2fe8a3256287708357419c Wed Nov 2 15:46:33 2022 -0700
    Raise the limit on how many sequences we'll show details for -- @corneliusroemer's request in #yatisht/usher/298.
  • lines changed 2, context: html, text, full: html, text
    d354f7c4ff9867b3a64ecaadba87ba2381371e27 Mon Nov 7 16:46:38 2022 -0800
    In Nextstrain view (JSON), show the Nextstrain clade and Pango lineage assigned by usher for uploaded samples. Make Pango lineage the default coloring, and add a filter to highlight uploaded samples so user immediately sees the uploaded samples' lineage(s) and placement in the subtree. Also, for uploaded names/IDs, don't truncate at first comma until we check whether line is a list of IDs / ID ranges.
• src/hg/hgPhyloPlace/treeToAuspiceJson.c
  • lines changed 22, context: html, text, full: html, text
    d354f7c4ff9867b3a64ecaadba87ba2381371e27 Mon Nov 7 16:46:38 2022 -0800
    In Nextstrain view (JSON), show the Nextstrain clade and Pango lineage assigned by usher for uploaded samples. Make Pango lineage the default coloring, and add a filter to highlight uploaded samples so user immediately sees the uploaded samples' lineage(s) and placement in the subtree. Also, for uploaded names/IDs, don't truncate at first comma until we check whether line is a list of IDs / ID ranges.
  • lines changed 2, context: html, text, full: html, text
    11f81d207f0d0c4e66697e4df53f7cf2ed1f9a4d Tue Nov 8 13:08:17 2022 -0800
    Add node[branch_attrs][label][id] to JSON so links can be formed by node ID, HT @corneliusroemer in #yatisht/usher/#284.