e54f20a28dc5dbe09d90abb37b633be3797eb66d hiram Fri Nov 11 10:46:27 2022 -0800 correct label field on ncbiRefSeqOther refs #29545 diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh index 2ee490f..ffa5458 100755 --- src/hg/utils/automation/asmHubTrackDb.sh +++ src/hg/utils/automation/asmHubTrackDb.sh @@ -505,31 +505,31 @@ ln -s ../trackData/ncbiRefSeq/$asmId.ncbiRefSeqOther.bb $buildDir/bbi/${asmId}.ncbiRefSeqOther.bb rm -f $buildDir/ixIxx/${asmId}.xenoRefGene.ix ln -s ../trackData/ncbiRefSeq/$asmId.ncbiRefSeqOther.ix $buildDir/ixIxx/${asmId}.ncbiRefSeqOther.ix ln -s ../trackData/ncbiRefSeq/$asmId.ncbiRefSeqOther.ixx $buildDir/ixIxx/${asmId}.ncbiRefSeqOther.ixx printf " track ncbiRefSeqOther color 32,32,32 parent refSeqComposite on shortLabel RefSeq Other longLabel NCBI RefSeq other annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*) priority 4 searchIndex name searchTrix ixIxx/%s.ncbiRefSeqOther.ix bigDataUrl bbi/%s.ncbiRefSeqOther.bb type bigBed 12 + - labelFields gene + labelFields name skipEmptyFields on urls GeneID=\"https://www.ncbi.nlm.nih.gov/gene/\$\$\" MIM=\"https://www.ncbi.nlm.nih.gov/omim/\$\$\" HGNC=\"http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=\$\$\" FlyBase=\"http://flybase.org/reports/\$\$\" WormBase=\"http://www.wormbase.org/db/gene/gene?name=\$\$\" RGD=\"https://rgd.mcw.edu/rgdweb/search/search.html?term=\$\$\" SGD=\"https://www.yeastgenome.org/locus/\$\$\" miRBase=\"http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=\$\$\" ZFIN=\"https://zfin.org/\$\$\" MGI=\"http://www.informatics.jax.org/marker/\$\$\"\n\n" "${asmId}" "${asmId}" fi if [ -s ${buildDir}/trackData/ncbiRefSeq/$asmId.bigPsl.bb ]; then rm -f $buildDir/bbi/${asmId}.bigPsl.bb ln -s ../trackData/ncbiRefSeq/$asmId.bigPsl.bb $buildDir/bbi/${asmId}.bigPsl.bb printf " track ncbiRefSeqPsl priority 5 parent refSeqComposite off shortLabel RefSeq Alignments longLabel RefSeq Alignments of RNAs type bigPsl