File Changes for markd

v440_preview to v440_preview2 (2022-11-07 to 2022-11-14) v440

• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV26lift37.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV27lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV28lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV29lift37.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV30lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV31lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV32lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV33lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV34lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV35lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV36lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV37lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV38lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV39lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV40lift37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV23.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV24.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV25.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV27.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV28.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV29.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV30.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV31.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV32.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV33.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV34.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV35.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV36.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV37.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV38.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV39.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV40.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM11.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM14.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM15.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM17.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM18.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM19.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM20.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM21.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM22.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM23.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM24.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM26.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM27.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM28.ra
  • lines changed 1, context: html, text, full: html, text
    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/makeDb/trackDb/mouse/mm39/wgEncodeGencodeVM29.ra
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    f6a1ffbc8acdedbd8b4ce11f1fb73aef70b18bdb Sat Nov 12 16:13:43 2022 -0800
    change older all gencode tracks to be hidden by default
• src/hg/utils/automation/aliasTextToBed.pl
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    26d45e650717542b662ab602aa4d9a37dda67885 Wed Nov 9 19:14:57 2022 -0800
    generate error if a chromsome in first column of chromAlias is not in chromSizes instead of spew perl warnings
• src/hg/utils/overlapSelect/chromAnn.c
  • lines changed 9, context: html, text, full: html, text
    2c43bbe76a2350dfd358bbb5047237243dcb984e Tue Nov 8 23:09:32 2022 -0800
    added a test case and improved debug and clarified code. However it was pointless, because there was not accutally a bug, just a confused user
• src/hg/utils/overlapSelect/selectTable.c
  • lines changed 18, context: html, text, full: html, text
    2c43bbe76a2350dfd358bbb5047237243dcb984e Tue Nov 8 23:09:32 2022 -0800
    added a test case and improved debug and clarified code. However it was pointless, because there was not accutally a bug, just a confused user
• src/hg/utils/overlapSelect/tests/expected/cdsOverlapGpBed12.bed
  • lines changed 3, context: html, text, full: html, text
    2c43bbe76a2350dfd358bbb5047237243dcb984e Tue Nov 8 23:09:32 2022 -0800
    added a test case and improved debug and clarified code. However it was pointless, because there was not accutally a bug, just a confused user
• src/hg/utils/overlapSelect/tests/input/cds-overlap.gencode.gp
  • lines changed 32, context: html, text, full: html, text
    2c43bbe76a2350dfd358bbb5047237243dcb984e Tue Nov 8 23:09:32 2022 -0800
    added a test case and improved debug and clarified code. However it was pointless, because there was not accutally a bug, just a confused user
• src/hg/utils/overlapSelect/tests/input/cds-overlap.rmsk.bed
  • lines changed 3, context: html, text, full: html, text
    2c43bbe76a2350dfd358bbb5047237243dcb984e Tue Nov 8 23:09:32 2022 -0800
    added a test case and improved debug and clarified code. However it was pointless, because there was not accutally a bug, just a confused user
• src/hg/utils/overlapSelect/tests/makefile
  • lines changed 7, context: html, text, full: html, text
    2c43bbe76a2350dfd358bbb5047237243dcb984e Tue Nov 8 23:09:32 2022 -0800
    added a test case and improved debug and clarified code. However it was pointless, because there was not accutally a bug, just a confused user