6bcb55e7757cef7074e4182e58be5ad8a1281833 gperez2 Thu Dec 8 12:09:51 2022 -0800 Adding a dash (-) for layout consistency in the Transcript ranking section, refs #29789 #29790 #29791 diff --git src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html index e86dba6..584003a 100644 --- src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html +++ src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html @@ -148,31 +148,31 @@ -1st: MANE Select / Ensembl canonical
-2nd: MANE Plus Clinical
  • Coding biotypes
    -1st: protein_coding and protein_coding_LoF
    -2nd: NMDs and NSDs
    -3rd: retained intron and protein_coding_CDS_not_defined
  • Completeness
    -1st: full length
    -2nd: CDS start/end not found
  • CARS score (only for coding transcripts)
  • Transcript genomic span and length (only for non-coding transcripts)
  • Non-coding genes
    1. Transcript biotype
      - 1st: transcript biotype identical to gene biotype + -1st: transcript biotype identical to gene biotype
    2. Ensembl canonical
    3. GENCODE basic
    4. Transcript genomic span
    5. Transcript length

    Transcription Support Level (TSL): It is important that users understand how to assess transcript annotations that they see in GENCODE. While some transcript models have a high level of support through the full length of their exon structure, there are also transcripts that are poorly supported and that should be considered speculative. The Transcription Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method