4312c884bef3a7db6c2fb009aa8f0fa6c657f911 hiram Mon Nov 28 13:10:34 2022 -0800 catch up about 34 assemblies for VGP refs #29545 diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index b24e94d..0724ba5 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -73,46 +73,65 @@ 100784 GCA_011004875.1_bBalReg1.pri birds 9483 GCA_011078405.1_mCalJac1.mat primates 9483 GCA_011100535.1_mCalJac1.pat primates 9483 GCA_011100555.1_mCalJac1.pat.X primates 9337 GCA_011100635.1_mTriVul1.pri mammals 9337 GCA_011100645.1_mTriVul1.alt mammals 61156 GCA_011750645.1_mArvNil1.mat mammals 61156 GCA_011762505.1_mArvNil1.pat.X mammals 9739 GCA_011762515.1_mTurTru1.pat mammals 9739 GCA_011762535.1_mTurTru1.mat mammals 61156 GCA_011762545.1_mArvNil1.pat mammals 9739 GCA_011762595.1_mTurTru1.mat.Y mammals 13146 GCA_012275265.1_bMelUnd1.mat birds 13146 GCA_012275275.1_bMelUnd1.pat birds 13146 GCA_012275295.1_bMelUnd1.mat.Z birds +882753 GCA_013358685.1_fAntMac1.pri fish 48427 GCA_013368605.1_bNycGra1.pri birds +195821 GCA_014839685.1_fAnaAna1.pri fish 73324 GCA_014839755.1_bSylBor1.pri birds 118200 GCA_014839835.1_bDryPub1.pri birds +129108 GCA_014839995.1_fXenCan1.pri fish 488313 GCA_015220805.1_bPogPus1.pri birds 10116 GCA_015244455.1_mRatBN7.1_alternate_haplotype mammals 8790 GCA_016128335.1_ZJU1.0 birds +9606 GCA_016695395.2_mHomSap3.mat mammals +9606 GCA_016700455.2_mHomSap3.pat mammals 57068 GCA_016904835.1_bAcaChl1.pri birds 670352 GCA_017639485.1_bPluApr1.pri birds 52777 GCA_017639555.1_bCicMag1.pri birds +148594 GCA_017639645.1_bFalNau1.mat birds +946358 GCA_017639675.1_fAplTae1.pri fish 55661 GCA_017976375.1_bCucCan1.pri birds +390368 GCA_020510985.1_fPhoLeu1.pri fish +51337 GCA_020740715.1_mJacJac1.pat.decon mammals 8895 GCA_020740795.1_bApuApu2.pri.cur birds +34787 GCA_020745685.1_fTauAds1.pri.cur fish 243314 GCA_020745705.1_bHemCom1.pri.cur birds 1118847 GCA_020745775.1_bTheCae1.pri.cur birds 297711 GCA_020746105.1_bTroSur1.pri.cur birds 439704 GCA_020800305.1_bPorHoc1.mat.Z.cur birds 439704 GCA_020801775.1_bPorHoc1.pat.decon birds +77932 GCA_020826835.1_mDicBic1.pat.decon mammals +77932 GCA_020826845.1_mDicBic1.mat.cur mammals +345164 GCA_023634085.1_bFalChe1.pri birds +8954 GCA_023634155.1_bFalPer1.pri birds +345155 GCA_023638135.1_bFalBia1.pri birds +48850 GCA_023851605.1_mTamTet1.pri mammals +246179 GCA_024294585.1_rVipLat1.pri reptiles +286002 GCA_025201965.1_rGopFla2.pat.asm reptiles +48708 GCA_025265405.1_mMesDen1_primary_haplotype mammals 64144 GCA_900324465.2_fAnaTes1.2 fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 441366 GCA_900634775.1_fGouWil2.1 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish 205130 GCA_900700395.1_fMasArm1.2_alternate_haplotype fish 27687 GCA_900700845.2_fErpCal1.1_alternate_haplotype fish 8175 GCA_900880695.1_fSpaAur1.1_alternate_haplotype fish 173247 GCA_900963505.1_fEcheNa1.1_alternate_haplotype fish 113540 GCA_900964985.2_fSclFor1.1_alternate_haplotype fish 31033 GCA_901000745.3_fTakRub1.2_alternate_haplotype fish @@ -126,32 +145,47 @@ 586833 GCA_902148815.1_fMyrMur1.1_alternate_haplotype fish 375764 GCA_902148825.1_fSphaOr1.1_alternate_haplotype fish 181472 GCA_902148835.1_fSalaFa1.1_alternate_haplotype fish 223781 GCA_902153765.1_bAquChr1.2_alternate_haplotype birds 8049 GCA_902167395.1_gadMor3.0_alternate_haplotype fish 29144 GCA_902362175.1_fChaCha1.1_alternate_haplotype fish 7604 GCA_902459445.1_eAstRub1.2_alternate_haplotype echinoderm 260995 GCA_902459495.1_aGeoSer1.1_alternate_haplotype amphibians 260995 GCA_902459505.1_aGeoSer1.1 amphibians 390379 GCA_902500245.1_fThaAma1.1_alternate_haplotype fish 390379 GCA_902500255.1_fThaAma1.1 fish 55149 GCA_902685485.1_mSciVul1.1_alternate_haplotype mammals 55149 GCA_902686455.1_mSciVul1.1 mammals 7906 GCA_902713425.1_fAciRut3.1_maternal_haplotype fish 7906 GCA_902713435.1_fAciRut3.1_paternal_haplotype fish +7955 GCA_903684855.2_fDreTuH1.2 fish +7955 GCA_903684865.1_fDreABH1.1 fish 37610 GCA_903797595.2_bEriRub2.2 birds +59474 GCA_903992545.1_mPipPip1.1 mammals +36212 GCA_905171665.2_fTraTra1.2 fish +9612 GCA_905319855.2_mCanLor1.2 mammals 111811 GCA_907165065.1_bCapEur3.1 birds +61643 GCA_910589615.1_fTauBub2.1 fish +56726 GCA_910591455.2_fPhoGun1.2 fish +9662 GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated mammals +446457 GCA_933228915.1_fTelBon1.1 fish +40830 GCA_936440315.1_fBarBab1.1 fish +7955 GCA_944039275.1_fDanRer4.1 fish +933932 GCA_946808225.1_fSilAri3.1 fish +135647 GCA_947034865.1_fBarBar1.1 fish +10129 GCA_947179515.1_mApoSyl1.1 mammals +103942 GCA_947247035.1_rVipUrs1.1 reptiles 30522 GCF_003369695.1_UOA_Brahman_1 mammals 9244 GCF_003957555.1_bCalAnn1_v1.p birds 59729 GCF_003957565.1_bTaeGut1_v1.p birds 59729 GCF_003957565.2_bTaeGut1.4.pri birds 2489341 GCF_004027225.2_bStrHab1.2.pri birds 9258 GCF_004115215.2_mOrnAna1.pri.v4 mammals 59479 GCF_004115265.1_mRhiFer1_v1.p mammals 89673 GCF_004126475.1_mPhyDis1_v1.p mammals 89673 GCF_004126475.2_mPhyDis1.pri.v3 mammals 63155 GCF_007364275.1_fArcCen1 fish 1825980 GCF_007399415.2_rGopEvg1_v1.p reptiles 61383 GCF_007474595.1_mLynCan4_v1.p mammals 61383 GCF_007474595.2_mLynCan4.pri.v2 mammals 42100 GCF_008692025.1_mPhoSin1.pri mammals 59729 GCF_008822105.2_bTaeGut2.pat.W.v2 birds @@ -184,31 +218,30 @@ 8005 GCF_013358815.1_fEleEle1.pri fish 118141 GCF_013368585.1_fMegCyp1.pri fish 51298 GCF_014108235.1_mMyoMyo1.p mammals 59472 GCF_014108245.1_mPipKuh1.p mammals 27622 GCF_014108415.1_mMolMol1.p mammals 9407 GCF_014176215.1_mRouAeg1.p mammals 120794 GCF_015220075.1_bFalRus1.pri birds 27675 GCF_015220235.1_mChoDid1.pri mammals 42514 GCF_015220715.1_fPygNat1.pri fish 72105 GCF_015220745.1_fSebUmb1.pri fish 10116 GCF_015227675.2_mRatBN7.2 mammals 43150 GCF_015227805.1_bHirRus1.pri.v2 birds 8469 GCF_015237465.1_rCheMyd1.pri reptiles 8469 GCF_015237465.2_rCheMyd1.pri.v2 reptiles 8839 GCF_015476345.1_ZJU1.0 birds -8839 GCF_015476345.1_ZJU1.0 birds 9261 GCF_015852505.1_mTacAcu1.pri mammals 9031 GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b birds 9031 GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w birds 9031 GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w birds 13397 GCF_017639515.1_sCarCar2.pri sharks 148594 GCF_017639655.1_bFalNau1.pat birds 148594 GCF_017639655.2_bFalNau1.pat birds 1250792 GCF_017639745.1_fMelBoe1.pri fish 109905 GCF_017976325.1_fCheRos1.pri fish 941984 GCF_017976425.1_fToxJac2.pri fish 34773 GCF_018492685.1_fAloSap1.pri fish 33562 GCF_019393635.1_mDroGli1.pri mammals 75038 GCF_020382885.2_fScaArg1.pri fish 9447 GCF_020740605.2_mLemCat1.pri mammals 51337 GCF_020740685.1_mJacJac1.mat.Y.cur mammals