Commits for markd

v441_preview to v441_preview2 (2022-11-28 to 2022-12-05) v441

5c34b9229866a9c0033003e2c21509b8de55f87e Tue Nov 29 09:39:18 2022 -0800

• include some of the GFF3 positional value in the attributes output file
  • src/hg/utils/gff3ToGenePred/gff3ToGenePred.c - lines changed 9, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/makeBadTest.attrs - lines changed 96, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/mm10GencodeTest.attrs - lines changed 48, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/nameAttrNameTest.attrs - lines changed 12, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/ncbiProblemsTest.attrs - lines changed 48, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/ncbiSegmentsTest.attrs - lines changed 162, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/useNameTest.attrs - lines changed 12, context: html, text, full: html, text

c96203c4fb3523f0339e83da69a708fab7706250 Tue Nov 29 09:44:08 2022 -0800

• opps, the previous commit left out the all-important name in gff3ToGenePred attributes
  • src/hg/utils/gff3ToGenePred/gff3ToGenePred.c - lines changed 6, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/makeBadTest.attrs - lines changed 96, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/mm10GencodeTest.attrs - lines changed 48, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/nameAttrNameTest.attrs - lines changed 12, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/ncbiProblemsTest.attrs - lines changed 48, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/ncbiSegmentsTest.attrs - lines changed 162, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/useNameTest.attrs - lines changed 12, context: html, text, full: html, text

77dba36e6886565e458923533d0dd4d173641fb4 Thu Dec 1 12:21:46 2022 -0800

• display GENCODE transcript rank in hgc when it is available
  • src/hg/hgc/gencodeClick.c - lines changed 6, context: html, text, full: html, text