dd4821f6b5e8b5dd02947ee9ebf8eb0b3bedaebb gperez2 Mon Dec 12 16:24:58 2022 -0800 Fixing the biotype link for Non-coding transcript categorization section, refs #29789 #29790 #29791 diff --git src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html index 584003a..9ec2524 100644 --- src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html +++ src/hg/makeDb/trackDb/wgEncodeGencodeDisplay1.shared.html @@ -115,31 +115,31 @@ <li> All full-length non-coding transcripts (except problem transcripts) with a well characterized Biotype (see below) were included in the basic set.</li> <li> If there were no transcripts meeting the above criteria, then the largest non-coding transcript was included in the basic set (excluding problem transcripts).</li> </ul> </li> <li> If no transcripts were included by either of the above criteria, the longest problem transcript is included. </li> </ul> <P> <b>Non-coding transcript categorization:</b> Non-coding transcripts are categorized using -their <a href="https://www.gencodegenes.org/gencode_biotypes.html" target="_blank">Biotype</a> +their <a href="https://www.gencodegenes.org/pages/biotypes.html" target="_blank">biotype</a> and the following criteria: </p> <ul> <li> well characterized: <em>antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA</em></li> <li> poorly characterized: <em>3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping</em></li> </ul> <p><b>Transcript ranking:</b> Within each gene, transcripts have been ranked according to the following criteria. The ranking approach is preliminary and will change is future releases. </p> <ul> <li> Protein_coding genes