Commits for hiram

v441_base to v442_preview (2022-12-12 to 2022-12-19) v442

967b763f92c9dc4d3e57399de0c875029d828ef1 Tue Dec 13 20:58:42 2022 -0800

• now running the next version of RepeatMasker v4.1.4 refs #29545
  • src/hg/utils/automation/asmHubRepeatMasker.sh - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/automation/doRepeatMasker.pl - lines changed 34, context: html, text, full: html, text

29bf2c22b06f9d457bcd43ef2029bad054542ba8 Thu Dec 15 11:35:24 2022 -0800

• initial version of running RepeatModeler no redmine
  • src/hg/utils/automation/doRepeatModeler.pl - lines changed 307, context: html, text, full: html, text

55a4d2f27b5f2be54928d7cc454b062f67045b21 Thu Dec 15 11:53:15 2022 -0800

• correct thru cleanup no redmine
  • src/hg/utils/automation/doRepeatModeler.pl - lines changed 14, context: html, text, full: html, text

395595f60c883b2344ae20299687563b8ea6e215 Thu Dec 15 14:10:23 2022 -0800

• adding RepeatModeler option no redmine
  • src/hg/utils/automation/doAssemblyHub.pl - lines changed 59, context: html, text, full: html, text

6ec26e523de0fce9e1435744362391c75240affa Thu Dec 15 14:13:09 2022 -0800

• fixup clade specifications to be consistent and add one new build GCF_025331425.1_Radspe1 to test RepeatModeler no redmine
  • src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 365, context: html, text, full: html, text

a59d996823e2008757817774344f116efe6439f3 Thu Dec 15 15:01:09 2022 -0800

• adding GCF_025331425.1_Radspe1 to test RepeatModeler result no redmine
  • src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv - lines changed 1, context: html, text, full: html, text