6828d99220ef4549484f1fdb31210aee5451fccd
max
  Tue Dec 13 12:28:31 2022 -0800
link to FAQ from hgLiftOver about dbSNP, refs #30394

diff --git src/hg/hgLiftOver/hgLiftOver.c src/hg/hgLiftOver/hgLiftOver.c
index 984dc0f..788aea7 100644
--- src/hg/hgLiftOver/hgLiftOver.c
+++ src/hg/hgLiftOver/hgLiftOver.c
@@ -180,34 +180,37 @@
 cgiSimpleTableFieldStart();
 cgiMakeDoubleVar(HGLFT_MINBLOCKS,(keepSettings) ? minBlocks : chain->minBlocks,6);
 cgiTableFieldEnd();
 cgiTableRowEnd();
 
 cgiSimpleTableRowStart();
 cgiTableField("If thickStart/thickEnd is not mapped, use the closest mapped base:");
 cgiSimpleTableFieldStart();
 cgiMakeCheckBox(HGLFT_FUDGETHICK,(keepSettings) ? fudgeThick : (chain->fudgeThick[0]=='Y'));
 cgiTableFieldEnd();
 cgiTableRowEnd();
 
 cgiTableEnd();
 
 /* text box and two buttons (submit, reset) */
-cgiParagraph(" Paste in data below, one position per line. You can use the "
+puts("<p style='margin-left:3px'>Paste in data below, one position per line. You can use the "
         "<a href='../../FAQ/FAQformat.html#format1'>BED format</a> (e.g. \"chr4 100000 100001\", "
         "0-based) or the format of the position box (\"chr4:100,001-100,001\", 1-based). "
-        "See the <a href='../goldenPath/help/hgTracksHelp.html#Liftover'>documentation</a>.\n");
+        "See the <a href='../goldenPath/help/hgTracksHelp.html#Liftover'>documentation</a>.\n"
+        "For SNPs that have rs-identifiers, we do not recommend liftOver, see "
+        "<a href='/FAQ/FAQreleases.html#snpConversion'>this FAQ</a> on fast lookups in our dbSNP tables.</p>\n");
+
 cgiSimpleTableStart();
 cgiSimpleTableRowStart();
 
 cgiSimpleTableFieldStart();
 cgiMakeTextArea(HGLFT_USERDATA_VAR, cartCgiUsualString(cart, HGLFT_USERDATA_VAR, NULL), 10, 80);
 cgiTableFieldEnd();
 
 /* right element of table is a nested table
  * with two buttons stacked on top of each other */
 cgiSimpleTableFieldStart();
 cgiSimpleTableStart();
 
 cgiSimpleTableRowStart();
 cgiSimpleTableFieldStart();
 cgiMakeSubmitButton();