Commits for angie

v442_preview to v442_preview2 (2022-12-19 to 2023-01-03) v442

da0e133025899dc28777e841a961f45fc4591297 Sat Dec 10 18:27:16 2022 -0800

• A few new lineages, path tweaks and pango masks for pango-designation release v1.17
  • src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 16, context: html, text, full: html, text

1c1a233dd8be4d16c15abdffdb8da88ee9b5a34b Wed Dec 14 19:46:30 2022 -0800

• Make it clear that C15240T is not a part of BQ.1.1 -- that was a tree-building/sequence problem.
  • src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv - lines changed 5, context: html, text, full: html, text

17743793f41d56eb703ba368534cbdad0c1b735e Sat Dec 31 13:09:33 2022 -0800

• When parsing GB accession out of full name, look for | so we skip over embedded reference accession in isolate name. Reported in https://github.com/cov-lineages/pango-designation/issues/1494
  • src/hg/hgPhyloPlace/phyloPlace.c - lines changed 6, context: html, text, full: html, text