deea5ecd50c17260a1d3e43ed7c36af0401241d7
gperez2
Sat Dec 31 14:58:42 2022 -0800
Fixing 404 link for the Static Page Cronjob 2022-12-15, no RM
diff --git src/hg/htdocs/goldenPath/help/blatSpec.html src/hg/htdocs/goldenPath/help/blatSpec.html
index 4c48c8e..0d27dee 100755
--- src/hg/htdocs/goldenPath/help/blatSpec.html
+++ src/hg/htdocs/goldenPath/help/blatSpec.html
@@ -47,31 +47,31 @@
Other programs in the blat suite are:
-
pslSort – combines and sorts the output of multiple blat runs.
The blat default output format is psl.
-
pslReps – selects the best alignments for a particular query
sequence, using a "near best in genome" approach.
-
pslPretty – converts alignments from psl format, which is a
tab-delimited format that does not include the bases themselves, to a more readable alignment
format.
-
faToTwoBit – converts
- fasta format sequence
+ fasta format sequence
files to the dense, randomly accessible .2bit
format that gfClient can use.
-
twoBitToFa – converts from .2bit format back to fasta
format.
-
faToNib – converts from fasta to the somewhat less dense,
randomly accessible .nib format that predated .2bit
format. Note that each .nib file can contain only a single sequence.
-
nibFrag – converts portions of a .nib file back to fasta
format.
Usage details for each of the above programs are described in the sections below. For all programs